Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1265 ATGGGGTTGTTTGAGGATCAAGAGGAGACCCCTATGCTAATGGGTTTCTTTTCTTTTCCTTCAAACATGGCCTCCTTTCCATCATCAGCTTCATTAGGATCGTCATGTAACCAATCTCTAGTCAAACCCACCTTCAATGGTAATAATTTTCTTTCTAATTCACACCACCATGCAGTACCTAATCTCTCTGCAGAAACGCTAATTCTATCATCACCATCCTCAGCAGCAACTCATGATCATCATGACCCTCTTCTTAAGCACAAAGATCAAGATTTTACTTCTAATACTACTCTACTAGGGTCAGGATCACGTCTCCTTTCCTTGCAGCAGAGATCAGCTGCGAACCTCTCATGGGCATGGGGAGAAGTGGGTGATCAGTACAGCATGAGTAGCAAAATAAATATGGTAACTCGTGGAGATAATGATCACCAAGATCATCATCATCATTATCATAATATAGGGGTTTCATCGATGAAGATGAAGAAGATAAAGGGAAGGAGGAAGGTGAGAGAGCCAAGATTTTGCTTCAAGACAATGAGCGATGTGGATGTCCTGGATGATGGTTACAAGTGGAGAAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCCAGGAGCTACTATAGATGCACGCAAGATAACTGTAGAGTCAAGAAAAGAGTGGAGAGATTAGCTGACGATCCAAGAATGGTGATCACTACATATGAAGGTAGACACGCTCACTCTCCATCCCAAGATGATTTGGAAGATTCTCAACCTTCATCCCACCTTAATAACTTCTTCTGGTAG 792 42.3 MGLFEDQEETPMLMGFFSFPSNMASFPSSASLGSSCNQSLVKPTFNGNNFLSNSHHHAVPNLSAETLILSSPSSAATHDHHDPLLKHKDQDFTSNTTLLGSGSRLLSLQQRSAANLSWAWGEVGDQYSMSSKINMVTRGDNDHQDHHHHYHNIGVSSMKMKKIKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLADDPRMVITTYEGRHAHSPSQDDLEDSQPSSHLNNFFW 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9395529 9398683 - Conep09aG0130300.1 Cone9ag1265 445428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1265 263 MobiDBLite consensus disorder prediction 248 263 - -
Cone9ag1265 263 Gene3D WRKY domain 172 238 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1265 263 SMART WRKY_cls 185 244 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1265 263 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 78 250 IPR044810 GO:0003700(InterPro)
Cone9ag1265 263 FunFam WRKY transcription factor 57 171 245 - -
Cone9ag1265 263 MobiDBLite consensus disorder prediction 237 263 - -
Cone9ag1265 263 ProSiteProfiles WRKY domain profile. 180 245 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1265 263 SUPERFAMILY WRKY DNA-binding domain 177 244 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1265 263 Pfam WRKY DNA -binding domain 186 242 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0527 Cone-Chr11:2860831 Cone9ag1265 Cone-Chr9:9395529 8.55E-43 dispersed
Cone14ag0482 Cone-Chr14:2345784 Cone9ag1265 Cone-Chr9:9395529 2.90E-20 dispersed
Cone15ag0511 Cone-Chr15:2482764 Cone9ag1265 Cone-Chr9:9395529 1.34E-45 dispersed
Cone6ag0813 Cone-Chr6:4129505 Cone9ag1265 Cone-Chr9:9395529 6.17E-32 dispersed
Cone9ag0026 Cone-Chr9:128238 Cone9ag1265 Cone-Chr9:9395529 8.43E-28 dispersed
Cone9ag0551 Cone-Chr9:2624393 Cone9ag1265 Cone-Chr9:9395529 2.89E-27 dispersed
Cone9ag0812 Cone-Chr9:3904808 Cone9ag1265 Cone-Chr9:9395529 4.96E-30 dispersed
Cone12ag0067 Cone-Chr12:381393 Cone9ag1265 Cone-Chr9:9395529 7.31E-23 wgd
Cone3ag0353 Cone-Chr3:1783575 Cone9ag1265 Cone-Chr9:9395529 2.43E-20 wgd
Cone6ag1318 Cone-Chr6:10613619 Cone9ag1265 Cone-Chr9:9395529 9.77E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46881 PF14144 DOG1 1.10E-20 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1265 - - - 0.0