Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1279 ATGTTTCTTTACCTTCTTATTCGGTCTCTTATAGCGGCGATTTTCATAGCCTCATCTTCAACCATCGCTCAAACCCTAAACTCAACGAGTTGCAGAACCGGCGAGTTAGGCGAACTCATATCTTATCCCTTCGGTTTCTCGAACTCGACTCCAATCCGATTGAATTGCGAGAACGGCAAGATCAGAATCGGAGAGTTTCGAGTCCAGAACATCACCGAGCGGAGCATTCTCATCGATCTACCCCCAGAATGCATCCGTCCGACTAAATCCATTTTACCTCTCTTCGGAGCGAACTACTGGCCGACTAGAAACAACAGCTTTCTGCTCAAGAACTGTTCGCCTCCGATCATCGACTGCGTGCAGCCGACTAGCTTCGTATCGGATCGATTATCGCTGCAAAAATGTGGTCCTATGAGCGACAATCAGAGCTGCTTCTCTCCGAATCCGACCATCGGAGATTATCTAGACTACGAGCCATCGAATTTGACTCGCTGCAGCTATCTGACCTCTTCAATCGTCCTTTACTCGGAGTTGAGCTCCACCGTCTCGCTCGCGTTTCAGGCCGTCGAGTTAGCCTGGTGGCTCAACGGTACGATCAAATGCGACAGGAATGCTTACTCCGAGAACATTACTCTCCCTAACAAGGAGGTAGGGTTCCGATGCCACTGCAAGAAAGGCTTTGAAGGAGATGCATACGCCGACGGAAACGGTTGCCGGAAAGCACCAGCTTGCAATGCTTCAAAGTACATGTCTGGGCGATGTGGAGGAACAACTCGAGTTGGTGTTCTTATTGGAGGTATAGTTGCCGGAGCCGTTGTAATGGCTAGTCTAGCAGTAATCTGCCACTTCATTAGACGCCGTTCATCCTGTTTAAGAAGCCAGTTAAGTGCAAAGCGTCTTCTAAGTGAAGCAGCAGGAAATTCAACTGTCCAATTATACCCCTTTAGAGAAATCGAGCGAGCCACAAACAGCTTCTCTGAAAAACAACGCCTCGGAACAGGAGCCTTTGGAACAGTCTATGCCGGAAAACTCAACAGCGATGAATGGGTAGCCATTAAAAAGATAAAATATAGAGACCATAACAGCATTGACCAAGTCATGAATGAAATCAAGCTCCTTTCTTCGGTCAGCCATCCAAACCTAGTCCGTCTCCTAGGTTGTTGCATTGACCAAGGTCAACAGATCCTTGTCTATGAGTTCATGCCGAATGGAACTCTATGTCAACATTTACAAAAGGAGAGAGGCAAAGGTCTTCCATGGACAATCCGGCTCACTATAGCTACTGAGATGGCTCATGCTATAGCTTATCTTCATTCCTCCATGCACCCACCTATATACCATAGAGACATTAAATCAAGCAATATACTTCTTGACTACCATTACAAGTCAAAGGTTGCTGATTTTGGTCTTTCTAGACTTGGATTGATCGAAACATCACATATTTCCACAGCCCCACAAGGGACCCCAGGATATCTGGACCCACAGTATCATCAGAACTTCTATCTCTCAGATAAGAGTGATGTTTATAGTTTTGGAGTGGTTCTGGTGGAAATAATTACCGCGTTAAAAGTGGTGGATTTTACCCGGCCTCAGAGTGAGGTGAATTTAGCTGCACTTGCTGTTGATAGGATCGGAAGAAATTGTGTAGATGAAATAATTGACCCTTGTCTTGAACCACATAGAGATGCTTGGACCCTTTACTCGGTCCATAAAGTAGCTGAGCTTGCATTTAGATGCCTTGCTTTTCACAGCGACATGAGGCCTTCTATGATGGAAGTTGCAAAAGAGCTAGAGAATATAAGACTAAGTGGACGGGCTTCAACGGGGGAGAATATATGTGTGGAATCATCTATAGGGTCGTCTTGTTCATTTTTGTATAACGGAAATGAGAGATCGATTGGTGGAGGGATGATGGGAAAGGTTGTGGAGCCCGAGAGCTGGAGATCGACGGTTGAGATTAAGGATAAGGATAGGGGTGATGGTGGTTTGGAAATGGTGGGAGAGATTGTAGATCGCTCCCCTGTTTCTGTACAGGATCCTTGGTTAAGTGAGCAGAGCTCCCCTTCAGCAAATGGTTTGTTGGGTAATGTAATTCACTGA 2100 46.0 MFLYLLIRSLIAAIFIASSSTIAQTLNSTSCRTGELGELISYPFGFSNSTPIRLNCENGKIRIGEFRVQNITERSILIDLPPECIRPTKSILPLFGANYWPTRNNSFLLKNCSPPIIDCVQPTSFVSDRLSLQKCGPMSDNQSCFSPNPTIGDYLDYEPSNLTRCSYLTSSIVLYSELSSTVSLAFQAVELAWWLNGTIKCDRNAYSENITLPNKEVGFRCHCKKGFEGDAYADGNGCRKAPACNASKYMSGRCGGTTRVGVLIGGIVAGAVVMASLAVICHFIRRRSSCLRSQLSAKRLLSEAAGNSTVQLYPFREIERATNSFSEKQRLGTGAFGTVYAGKLNSDEWVAIKKIKYRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIDQGQQILVYEFMPNGTLCQHLQKERGKGLPWTIRLTIATEMAHAIAYLHSSMHPPIYHRDIKSSNILLDYHYKSKVADFGLSRLGLIETSHISTAPQGTPGYLDPQYHQNFYLSDKSDVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAVDRIGRNCVDEIIDPCLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPSMMEVAKELENIRLSGRASTGENICVESSIGSSCSFLYNGNERSIGGGMMGKVVEPESWRSTVEIKDKDRGDGGLEMVGEIVDRSPVSVQDPWLSEQSSPSANGLLGNVIH 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9578313 9582500 + Conep09aG0131700.1 Cone9ag1279 445442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1279 699 Gene3D Phosphorylase Kinase; domain 1 286 400 - -
Cone9ag1279 699 SUPERFAMILY Protein kinase-like (PK-like) 306 598 IPR011009 -
Cone9ag1279 699 Pfam Protein kinase domain 326 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1279 699 Gene3D Transferase(Phosphotransferase) domain 1 401 614 - -
Cone9ag1279 699 ProSiteProfiles Protein kinase domain profile. 325 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1279 699 FunFam Wall-associated receptor kinase-like 14 292 400 - -
Cone9ag1279 699 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524(InterPro)
Cone9ag1279 699 FunFam Wall-associated receptor kinase-like 20 401 610 - -
Cone9ag1279 699 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 27 686 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cone9ag1279 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1279 699 SMART serkin_6 325 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1312 Cone-Chr17:9314587 Cone9ag1279 Cone-Chr9:9578313 1.82E-235 dispersed
Cone4ag1879 Cone-Chr4:13434443 Cone9ag1279 Cone-Chr9:9578313 8.13E-208 dispersed
Cone7ag1497 Cone-Chr7:10467632 Cone9ag1279 Cone-Chr9:9578313 2.12E-80 dispersed
Cone7ag1498 Cone-Chr7:10473344 Cone9ag1279 Cone-Chr9:9578313 2.42E-71 dispersed
Cone7ag1788 Cone-Chr7:11731708 Cone9ag1279 Cone-Chr9:9578313 4.31E-229 dispersed
Cone9ag1279 Cone-Chr9:9578313 Cone13ag1294 Cone-Chr13:9676434 1.15E-65 dispersed
Cone3ag0366 Cone-Chr3:1855957 Cone9ag1279 Cone-Chr9:9578313 1.90E-83 wgd
Cone6ag1365 Cone-Chr6:10938260 Cone9ag1279 Cone-Chr9:9578313 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83209 PF01190 Pollen_Ole_e_1 2.90E-18 CL0287 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1279 - - - 0.0