Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1286 ATGCTAGGCTTCGAGCCGCCGCCGTCAGAGGTGGAGCCCGTAGAGGAAGAAGAAGAAGGTGATCATGCATGCTTGATCAGTAATGATGCTATTCGAACTACATATGATCATACGTCTGGGATGTTATCAGAATTAATGTTAATTAACTTCCCTAGTAGTAGTAGTACTACTACTATTCCAGGTCATAACCAAGATCATGATGATCACCAATATGATCAAATTTCAAACAGTAATAACTCCATGCAGCTTTGTTTGATGAATCCAGTACAGAACCAGCCACCACCAAGATCATCTCCTTCTCCAAATCCTTTTTGTAACTCTCTTCAAATAGGAGGTCCTTTTGGTCAATTCATGTGGATCAGTACTCCCCATCATGATCATGATCCTCATAGTGCTCAAGAAGGAGGAGGAGGGAACAACCCTAGTACTCATCATCAAGGGCTCTCATTGTCACTCTCATCTTCATTGCAACACTACAATAATTACAATCATAATCAGATTTATGAAGATCAAGGAGGATCTAATTCATTCAAAATTTTAGATAATAATATTTACCAGGGTCCAATTCCAATTCAAAATCCAAACGGTGATCATATGATAAATCAACCCACTTTCGGATTTGGCTTCGGGCAAAGGCCGTCATTAAGCGGTGGACTCAACTATCATTTGCTGAGTAATTCAAAGTATTTGATTGCAGCACAAGAATTGTTAGAAGAGTTTTGCAGTGTTGGAAGAGGTCAGTTTAAGAAGGTCATAAACAAGCTTGCTAAGCATAATAATTCTACCCGGCCAGGCGGCAGTGCAAGTAATAAACCGGACAGTTCAGGCCGTACTTGTTTATCACCAGCTGGTGATAGGATTGAGCATCAGCGGAAGAAGGTCAAACTCATATCCATACTTGATGAGGTGGATCGTAGATACAACAGCTACTGCGAGCAAATGCAAATGGTAGTAAGGCCATTTGACCTAGTGATGGGATATGGAGCAGCAGTGCCCTACACTGCTCTGACCCACAAGGCAATGTCGAGGCATTTTCGTCGCTTAAGGGACCCCATTGTTGCACAGTTGAAGCTAAGCTGTGAGTTACTTGGAGAGAAGGATCAACTTGGTTCATCTTCATTAGTATCATCATCAAAGTTAACGAAAGGGGAGACTCCACGGTTGAAAATGATAGAACAAGGCTTGAGGCAACAAAAGGGAAGCAATTTCCATCATTGTATGGGAGTTATGATCGAACCACAAGAAGCGTGGAGACCTCAACGTGGCTTGCCTGAACGATCTGTAAACATTTTGAGAGCTTGGCTTTTTGAGCATTTTCTTAACCCGTATCCAAGCGATGCAGACAAGCATGTATTGGCTCGCCAGACTGGCTTATCCAGAAATCAGGTTTCCAATTGGTTCATCAATGCTCGGGTTCGGTTGTGGAAACCAATGGTGGAGGAAATGTATCAACTAGAAGCCAAGAAAGAAGATGAAGAAGAAGAAGATGCAACCCATGATCATGAAAGCTACAGAAATGACATTACTACTGCCCCAGCACAAACTCCAATGCCGGTCACGGCGACACTATCGACCAATACCCCAACAGTACTTGATATATCATCTGCCGATGTTATCATTGCAATGAAAAACGACCCTTCATCACTCATTTCAATAAGAAGAAGACCACAATTAGCAACCAGCCCTATGGAAGGCAGCATGGAGATGGGACCAGTATCGCTACCACCTTTTCCCTCCATTTCTCAATTTTATACCGTGGTTGAACCAGAATACGGGACCACAGCCTCTGCGGATACTGACATCATCAGTTCAGGGACCACGGTGGCGGCGGGTGATGTGTCACTTACTTTGGGCCTACACCATGCTGGAAATATGCCCGGTAAGTGCTTGGATTCTTTCCCCGTTAGAGATTTTGAGGGTTGA 1923 43.42 MLGFEPPPSEVEPVEEEEEGDHACLISNDAIRTTYDHTSGMLSELMLINFPSSSSTTTIPGHNQDHDDHQYDQISNSNNSMQLCLMNPVQNQPPPRSSPSPNPFCNSLQIGGPFGQFMWISTPHHDHDPHSAQEGGGGNNPSTHHQGLSLSLSSSLQHYNNYNHNQIYEDQGGSNSFKILDNNIYQGPIPIQNPNGDHMINQPTFGFGFGQRPSLSGGLNYHLLSNSKYLIAAQELLEEFCSVGRGQFKKVINKLAKHNNSTRPGGSASNKPDSSGRTCLSPAGDRIEHQRKKVKLISILDEVDRRYNSYCEQMQMVVRPFDLVMGYGAAVPYTALTHKAMSRHFRRLRDPIVAQLKLSCELLGEKDQLGSSSLVSSSKLTKGETPRLKMIEQGLRQQKGSNFHHCMGVMIEPQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKHVLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEAKKEDEEEEDATHDHESYRNDITTAPAQTPMPVTATLSTNTPTVLDISSADVIIAMKNDPSSLISIRRRPQLATSPMEGSMEMGPVSLPPFPSISQFYTVVEPEYGTTASADTDIISSGTTVAAGDVSLTLGLHHAGNMPGKCLDSFPVRDFEG 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9611690 9614986 - Conep09aG0132500.1 Cone9ag1286 445449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1286 640 MobiDBLite consensus disorder prediction 258 283 - -
Cone9ag1286 640 MobiDBLite consensus disorder prediction 121 150 - -
Cone9ag1286 640 SMART HOX_1 417 481 IPR001356 GO:0003677(InterPro)
Cone9ag1286 640 MobiDBLite consensus disorder prediction 135 150 - -
Cone9ag1286 640 ProSiteProfiles 'Homeobox' domain profile. 414 477 IPR001356 GO:0003677(InterPro)
Cone9ag1286 640 SMART prehox3 216 354 IPR006563 -
Cone9ag1286 640 Gene3D - 420 482 - -
Cone9ag1286 640 MobiDBLite consensus disorder prediction 1 20 - -
Cone9ag1286 640 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 144 497 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone9ag1286 640 MobiDBLite consensus disorder prediction 258 277 - -
Cone9ag1286 640 FunFam BEL1-like homeodomain protein 4 420 482 - -
Cone9ag1286 640 Pfam Homeobox KN domain 434 473 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag1286 640 Pfam Associated with HOX 224 352 IPR006563 -
Cone9ag1286 640 CDD homeodomain 417 478 IPR001356 GO:0003677(InterPro)
Cone9ag1286 640 MobiDBLite consensus disorder prediction 56 75 - -
Cone9ag1286 640 SUPERFAMILY Homeodomain-like 418 484 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0798 Cone-Chr9:3829853 Cone9ag1286 Cone-Chr9:9611690 1.10E-63 dispersed
Cone12ag0085 Cone-Chr12:466788 Cone9ag1286 Cone-Chr9:9611690 9.47E-125 wgd
Cone3ag0372 Cone-Chr3:1878156 Cone9ag1286 Cone-Chr9:9611690 5.46E-56 wgd
Cone8ag0088 Cone-Chr8:468633 Cone9ag1286 Cone-Chr9:9611690 2.04E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46882 PF00293 NUDIX 3.10E-12 CL0261 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1286 - - - 0.0