Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag1307 | ATGTCATCGTCAAATTCGCCATGTGCGGCGTGCAAGTTTCTTCGCCGCAAGTGCACGCCAGAGTGCGTGTTCGCACCCTACTTCCCACCAGATCAGCCTAAAAAATTCGCCAATGTCCACAAGGTCTTTGGAGCGAGTAACGTGGCTAAGCTTCTGAACGAACTCGCTCAATCTCAACGAGACGATGCAGTAAACTCTCTAGCCTATGAGGCTGAAGCTCGTCTTAAAGACCCAGTTTATGGCTGTGTAGGCCTCATCTCGATCCTTCAACAAACGCTCAAGCAAATGCAGAACGAGCTCTATAAAGCTCAGCACGAGCTCTCCGCTTACATCGGGCAACAAGCTATGATACAGATCTTGCCTTCTCAGTCGCTCTCGGGTATTAATAATATTCCGTCTTGTTCTTCAGTTTTGCCGTATAACGTGTACAGTACAACTCCCAGGGGCGGGCTGGCCCTTGGCCCCAGCCCGGGTTCGCATAGTGGACAGTTGAGGTTTATTGATCAGGCTCAGCAGCAGCAACAGCAACAGATTTTCGAGGCTCAACAATTTGGGGTTACTAGAGATCACCATAGGCAACAACAGGAGCAGCAGATATTTAGTGGATTTGAGCCGAAACATGAAGCGGGGGTGCACCTGAGGAATCTGCAGCCGCAATTACAGGATCAGCAGTTAATGAGGCTAAACGACGCGTTTAATAATCATGCCACTACTGGATCGGTTACTACTGCCGGCGGGTTTGTGAATCAGATAAACAGTGGTTCTTCTGGGTTAGTAGCGTCGCCTTCGGCCTTGATTTTGGGTGGTTATTTTGATGATAATAACAACCGTTGTCAAATACAAGTAGAGCAGCGGGATCAAAACCCTCATATTCATCATCATCTTCAGCTACGGACACAGCTTTTGGTGGGAGGACGTGATCAACATGGACAAGGAGAACCGGCGTTGCAGACTGAGCAATTGCAGCAGCAACAGCGGCGACAAGAGAAGACGGAAGAGGAGGAGGAGGATCGGACAGTGGGTCTCTCTTCTTGA | 1035 | 49.37 | MSSSNSPCAACKFLRRKCTPECVFAPYFPPDQPKKFANVHKVFGASNVAKLLNELAQSQRDDAVNSLAYEAEARLKDPVYGCVGLISILQQTLKQMQNELYKAQHELSAYIGQQAMIQILPSQSLSGINNIPSCSSVLPYNVYSTTPRGGLALGPSPGSHSGQLRFIDQAQQQQQQQIFEAQQFGVTRDHHRQQQEQQIFSGFEPKHEAGVHLRNLQPQLQDQQLMRLNDAFNNHATTGSVTTAGGFVNQINSGSSGLVASPSALILGGYFDDNNNRCQIQVEQRDQNPHIHHHLQLRTQLLVGGRDQHGQGEPALQTEQLQQQQRRQEKTEEEEEDRTVGLSS | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 9810044 | 9811078 | - | Conep09aG0134700.1 | Cone9ag1307 | 445470 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag1307 | 344 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Cone9ag1307 | 344 | MobiDBLite | consensus disorder prediction | 325 | 344 | - | - | |
| Cone9ag1307 | 344 | MobiDBLite | consensus disorder prediction | 306 | 344 | - | - | |
| Cone9ag1307 | 344 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
| Cone9ag1307 | 344 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 193 | - | - | |
| Cone9ag1307 | 344 | Coils | Coil | 318 | 338 | - | - | |
| Cone9ag1307 | 344 | Coils | Coil | 86 | 113 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone18ag0386 | Cone-Chr18:1870220 | Cone9ag1307 | Cone-Chr9:9810044 | 5.46E-41 | dispersed | |
| Cone8ag1587 | Cone-Chr8:11808670 | Cone9ag1307 | Cone-Chr9:9810044 | 8.00E-44 | dispersed | |
| Cone9ag1121 | Cone-Chr9:7475993 | Cone9ag1307 | Cone-Chr9:9810044 | 7.29E-50 | dispersed | |
| Cone1ag1138 | Cone-Chr1:55637710 | Cone9ag1307 | Cone-Chr9:9810044 | 8.38E-34 | wgd | |
| Cone5ag0326 | Cone-Chr5:1378722 | Cone9ag1307 | Cone-Chr9:9810044 | 5.19E-34 | wgd | |
| Cone6ag1377 | Cone-Chr6:11057520 | Cone9ag1307 | Cone-Chr9:9810044 | 4.45E-204 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46888 | PF00847 | AP2 | 4.40E-14 | CL0081 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag1307 | - | - | - | 0.0 |