Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1333 ATGTGGGACCTTAACGACTCTCCGGATCGGAGGTTGGAGGATGAAGCGGAGGGATGTTCTTCACCCATTGACGGCGGCGACGATGAGAAGCGAAAACGGGTCGGTTCAGCCTCGAATTCCAGCTCATCAGCGATGGTTATAGAGGACGGATCCGAGGAAGAGGAAACTATTACTGGCGATAGAGGGATGTTAAGATTAGGCATAGAAAAAACCGTCGAAGAAGGCAGGAATAGTAAGATATTCGGTTTCGCCATGGATACCGACCATCCCGGTCATCCGGTGACCCGACAGTTTTTCCCGGTGGAAGAGTGCGAAATGGATCACGTCGTACCAGTCGGCGGCGGTGGGCAAAACTCGAACGGTAGTAGTACTGTTAGTAGTAGTGGCAACGGCGGCGCTGTATCTACTTTTCCCAGGGCCCACTGGTTCGGCGTAAAATTCAGCCATAGCGTCGACCCACTCGGCTCGGCTGCTAATTTTCTCGAAGCTTCGCAGCCGATGAAGAAGAGCCGGCGTGGACCAAGGTCAAGAAGCTCACAGTATCGTGGCGTCACTTTTTACCGGCGAACTGGCCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTTTATCTTGGTGGATTTGATACTGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCGTCAAGTTTCGAGGGATGGGCGCAGACATTAACTTCAGCATTGAAGACTATGAAGAGGATTTAAAGCAGATGAGCAATTTAACGAAGGAGGAATTTGTGCATGTACTAAGGAGACAAAGCACAGGGTTCCCAAGAGGGAGCTCAAAGTATAGAGGCGTTACTTTACACAAGTGCGGTAGATGGGAAGCTCGCATGGGCCAGTTTCTAGGCAAAAAGTACGTTTATTTGGGTTTGTTCGATACCGAGATCGAAGCTGCCCGGGCATATGACAAAGCTGCTATTAAGTTTAATGGCAAGGAGGCTGTCACTAACTTTGATCCTAGTATCTATGAGAATGACCTTAATGGAATAGATTCACCGGTTAATAATAATAATAATAATAACAATAATAATACTAGTAGTAGTAGTAGTAATGCTGCTCCTGCTGGTCATGATAATCATCACAATCTTGATTTGAGTCTGGGCAATTCAAGCTCAAAGCCTATCGATCAACACGCTTCATCAGTGGGTCCATTTGAAACTGACCTATGGAATCAGGGTTCCAGGCCTCAGGAGTTTAGTGGAGATATTAATAATGGCGGACAAAGAAGAAACGGGTATTTCGAGTCGGAAACTGCTCGATTTCTCACCCAAACACGTCTTAACACTTCAGCTTCGAATGAACTACAACATCAGAGTTACATGCAGTTCCATAGGATGAATCAAGATCAGTCTTCCCAGCTGCTCTACAGCAACAAACCCCACGCAACTCCTCTACTCCTTAATCCATCAAATTATCAAATTAATCAAGAGTTAATAGCAGGCAGCAGTAGTAGTAATATCGGAGGGCGAATAGGAAGTGATCTATCACTGTGTATGAGTGACCGCGAATTGCAGCAATCCAGTACTTCGCAACTGTTTACAACTGCTCTAGCAGCATCATCAGGATTCCCATCGACGTCGCAGATTAATATCAATGGACCCTCCTCCTCTCCATCTCCAAACTGGCTGCACAAAACTGGGCTCCACACCTCCTCTCTCATCTAA 1695 46.78 MWDLNDSPDRRLEDEAEGCSSPIDGGDDEKRKRVGSASNSSSSAMVIEDGSEEEETITGDRGMLRLGIEKTVEEGRNSKIFGFAMDTDHPGHPVTRQFFPVEECEMDHVVPVGGGGQNSNGSSTVSSSGNGGAVSTFPRAHWFGVKFSHSVDPLGSAANFLEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGMGADINFSIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKFNGKEAVTNFDPSIYENDLNGIDSPVNNNNNNNNNNTSSSSSNAAPAGHDNHHNLDLSLGNSSSKPIDQHASSVGPFETDLWNQGSRPQEFSGDINNGGQRRNGYFESETARFLTQTRLNTSASNELQHQSYMQFHRMNQDQSSQLLYSNKPHATPLLLNPSNYQINQELIAGSSSSNIGGRIGSDLSLCMSDRELQQSSTSQLFTTALAASSGFPSTSQININGPSSSPSPNWLHKTGLHTSSLI 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10006464 10009648 - Conep09aG0137400.1 Cone9ag1333 445496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1333 564 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 41 387 - -
Cone9ag1333 564 ProSiteProfiles AP2/ERF domain profile. 272 329 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 MobiDBLite consensus disorder prediction 373 397 - -
Cone9ag1333 564 ProSiteProfiles AP2/ERF domain profile. 180 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 SUPERFAMILY DNA-binding domain 179 237 IPR016177 GO:0003677(InterPro)
Cone9ag1333 564 FunFam AP2-like ethylene-responsive transcription factor 179 238 - -
Cone9ag1333 564 SMART rav1_2 180 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 SMART rav1_2 272 335 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 MobiDBLite consensus disorder prediction 534 564 - -
Cone9ag1333 564 FunFam AP2-like ethylene-responsive transcription factor 271 331 - -
Cone9ag1333 564 MobiDBLite consensus disorder prediction 339 397 - -
Cone9ag1333 564 PRINTS Ethylene responsive element binding protein signature 311 331 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 PRINTS Ethylene responsive element binding protein signature 273 284 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 MobiDBLite consensus disorder prediction 339 366 - -
Cone9ag1333 564 Pfam AP2 domain 271 321 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 Pfam AP2 domain 180 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 SUPERFAMILY DNA-binding domain 271 331 IPR016177 GO:0003677(InterPro)
Cone9ag1333 564 MobiDBLite consensus disorder prediction 1 57 - -
Cone9ag1333 564 CDD AP2 271 331 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 MobiDBLite consensus disorder prediction 1 35 - -
Cone9ag1333 564 Gene3D AP2/ERF domain 179 238 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1333 564 Gene3D AP2/ERF domain 271 330 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1474 Cone-Chr6:11740377 Cone9ag1333 Cone-Chr9:10006464 1.23E-42 dispersed
Cone9ag1333 Cone-Chr9:10006464 Cone6ag1392 Cone-Chr6:11213338 7.18E-10 dispersed
Cone12ag0139 Cone-Chr12:721303 Cone9ag1333 Cone-Chr9:10006464 1.48E-140 wgd
Cone5ag0321 Cone-Chr5:1359024 Cone9ag1333 Cone-Chr9:10006464 4.32E-60 wgd
Cone6ag1405 Cone-Chr6:11297736 Cone9ag1333 Cone-Chr9:10006464 3.56E-283 wgd
Cone8ag0138 Cone-Chr8:727322 Cone9ag1333 Cone-Chr9:10006464 4.33E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46892 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1333 K09284 - mtr:11407832 527.709