Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1335 ATGGACGGTGAAGACGAGAGGACCAGAGAGTCAACGAGGAAGAGATCTAGCGTCATCGTAGAGAATCAGAGGTCGTACAAAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGAGAGCCGAATAAGCGGTCCAGGATTTGGCTTGGCTCCTACTCCTCCCCCGTGGCGGCGGCTAGAGCCTACGACACGGCGGTGTTTCATTTACGAGGCCCCTCGGCTCAGCTGAATTTTCCCGAGTCGGTAGCTGGAGAGAGTTGCGTGATTAGCGGAGCTGGGTCGGACGACACGTCGGCTGCTTCTATAAGGAAGAGAGCGGCAGAAGTCGGAACGCGGGTTGATGCCCTTCAGAGTGCTCTAACTCGACATCACCAGCGTCAAAGCCAACATGCATCGACGGCGGTGAGTCATGAGTTGAAGGCTTGTGGAGGGTTCTTGGACCGGGTCGACTTGAATAAGTTACCCGACCCAGAAGATTCGGATGGTGAGTGTGAGTGGGAAAGAAATTAA 519 54.91 MDGEDERTRESTRKRSSVIVENQRSYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSAQLNFPESVAGESCVISGAGSDDTSAASIRKRAAEVGTRVDALQSALTRHHQRQSQHASTAVSHELKACGGFLDRVDLNKLPDPEDSDGECEWERN 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10025640 10026646 - Conep09aG0137600.1 Cone9ag1335 445498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1335 172 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
Cone9ag1335 172 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1335 172 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1335 172 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1335 172 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1335 172 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1335 172 CDD AP2 26 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1335 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 166 - -
Cone9ag1335 172 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Cone9ag1335 172 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0009 Cone-Chr7:51074 Cone9ag1335 Cone-Chr9:10025640 5.07E-22 dispersed
Cone9ag1335 Cone-Chr9:10025640 Cone7ag1461 Cone-Chr7:10308973 1.15E-20 dispersed
Cone12ag0140 Cone-Chr12:726874 Cone9ag1335 Cone-Chr9:10025640 7.14E-73 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone9ag1335 Cone-Chr9:10025640 9.74E-47 wgd
Cone20ag0201 Cone-Chr20:868165 Cone9ag1335 Cone-Chr9:10025640 4.85E-47 wgd
Cone4ag1590 Cone-Chr4:12138815 Cone9ag1335 Cone-Chr9:10025640 1.97E-44 wgd
Cone6ag1406 Cone-Chr6:11316885 Cone9ag1335 Cone-Chr9:10025640 8.46E-107 wgd
Cone7ag1360 Cone-Chr7:9870629 Cone9ag1335 Cone-Chr9:10025640 3.54E-44 wgd
Cone8ag0140 Cone-Chr8:740221 Cone9ag1335 Cone-Chr9:10025640 7.04E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46893 PF13920 zf-C3HC4_3 5.40E-10 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1335 K09286 - csv:101214481 219.935