Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1338 ATGTCCATCACCAAAAACCCACATCTCCTCTTTCTAATCACTCTCACATTCTCCGTCTCCGCCTACGCCGTCCTTACGGACTCTCCAGTCAACCTTCCATCCGACGCCGTTTCTCTACTATCATTCAAATCCAAAGCCGACTTAGACAACAAGCTCCTCTACGTCCTGAACGAGCGGTTCGACTACTGCCAATGGCAGGGCGTCAAGTGCGTCCAAGGCCGTGTCGTTTCCTTCGTCCTTCAAACCTTCCATCTACGAGGAGTCTTCGAACCGGACACCTTGACCCGGCTCGACCAGCTCCAAGTTCTCAACCTACAAAACAACTCGCTCGCCGGTCCGATTCCTGACCTCTCCGGTCTAGTCAACCTCAAATCTCTCTTCCTCGGCCTTAACTCCTTCTCCGGGGCTTTTCCTCAGTCAATTCTCGCTCTTCACCGGCTTCAAACCCTAGACCTCTCGTTTAACAACTTCACCGGTCCAATTCCAGAAAATTTATCCAGTTTGGACCGGCTGGCTTCTATCCGCCTGGAGTTGAACCGGTTTGACGGAAGCGTTCCGGCTTTGAATCAGTCCTCCCTTAAATCCTTCAATGTGACGGGGAACAATCTCACCGGTCCGATTCCGATGACACCTACACTCTCACGGTTCAACTCGGCGTCATTTTCACAAAATCCAGATCTCTGCGGAGAAATCATAAACAAACCGTGCAAATCACTATCTCCATTCTTCGAACCTCCGGTTCTAGGTCCGCCATCTCGACCTTCGATTCAGAGCGATCAATCACAGAGCATACTTGTCTCTCCTCCATCTTCAAAGAATCACAAGAAAACAGGCCTGATCCTGGGGCTTTCGATCGGCGTCGCAGTTCTACTCGCCGCTCTCTTGTGCCTCTTTGCAGCAATCAAAATCCAGAGAAGCCCTCCAACTTCGTCGACGGAAATAACAGCACCGCCTTTTCCTTCAACCGGAAACCCTAACTCCACCGCAAAAATTGAAGAAGAAAACGGAGAAATCCAAATCGAGGCGGAGAAAATCAACAGAGCTAATAACGAAACGATCAAGAAGAAGAAGAGAGGAGATCTAATCTTCTGCGCTGGCGAGGCGCCGTTATACAGCTTAGACCAGTTGATGCGAGGATCGGCGGAGTTGCTCGGGAGAGGTACAATCGGAACGACGTACAAGGCTGTGTTGAGTAACCAGCTAATCGTGACTGTGAAGAGAATCGATGCTTCAAGGACAGCAGATACGAGCAGCGAGGAGTTCGAACGGCAAATGGATGCCGTCGGCGAGCTCCGTCACCCGAATCTGGTTCCGGTGAGAGCTTATTTTCAAGCGAAGGGAGAGAGGCTCGTGATCTATGACTACCAGCCAAACGGCAGTCTCTTCAACCTTATTCACGGATCTAGGTCAACAAGAGCTAAGCCTCTGCATTGGACATCATGCTTGAAGATAGCAGAAGATGTAGCCCAAGGCCTAGCCTACATCCACAACCACAAATCATCCACCTCAATAATCCACGGCAACCTTAAATCCTCCAACATCCTCCTTGGACACGACTTTGAAGCCTGTCTGACAGACTACGGCCTCTCTCTCCTCACCGATGCTTCCCATGACGACCCCGACTCCATAGCTTACAAAGCACCTGAGACCCGCCACTCTAGCCACCATAGAGCCACTGCCAAGGTGGACGTATATGCATTTGGCGTGCTCTTGCTCGAGCTTTTGACGGGTAAACACCCTTCACAGCAACCATTTCTGCTGCCCGAAGACGTGCCCGAGTGGGTCTGGACAGTAAGAGATGGTGGTGCCGGGGGGGATAGTGATCGGCTTGAAATGCTGACAGAGGTGGCTAGTGTTTGTTGCTTGACAACTCCAGAACAGAGACCGGCTATGGTTCAAGTCTTGAAGATGATTGAGAAGATTAAGGAGACTGTAATGGTTGATGACGATAATGATTCTCCTGTTCGGTATTAA 1974 50.56 MSITKNPHLLFLITLTFSVSAYAVLTDSPVNLPSDAVSLLSFKSKADLDNKLLYVLNERFDYCQWQGVKCVQGRVVSFVLQTFHLRGVFEPDTLTRLDQLQVLNLQNNSLAGPIPDLSGLVNLKSLFLGLNSFSGAFPQSILALHRLQTLDLSFNNFTGPIPENLSSLDRLASIRLELNRFDGSVPALNQSSLKSFNVTGNNLTGPIPMTPTLSRFNSASFSQNPDLCGEIINKPCKSLSPFFEPPVLGPPSRPSIQSDQSQSILVSPPSSKNHKKTGLILGLSIGVAVLLAALLCLFAAIKIQRSPPTSSTEITAPPFPSTGNPNSTAKIEEENGEIQIEAEKINRANNETIKKKKRGDLIFCAGEAPLYSLDQLMRGSAELLGRGTIGTTYKAVLSNQLIVTVKRIDASRTADTSSEEFERQMDAVGELRHPNLVPVRAYFQAKGERLVIYDYQPNGSLFNLIHGSRSTRAKPLHWTSCLKIAEDVAQGLAYIHNHKSSTSIIHGNLKSSNILLGHDFEACLTDYGLSLLTDASHDDPDSIAYKAPETRHSSHHRATAKVDVYAFGVLLLELLTGKHPSQQPFLLPEDVPEWVWTVRDGGAGGDSDRLEMLTEVASVCCLTTPEQRPAMVQVLKMIEKIKETVMVDDDNDSPVRY 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10055351 10058721 - Conep09aG0137900.1 Cone9ag1338 445501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1338 657 SUPERFAMILY L domain-like 43 229 - -
Cone9ag1338 657 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 34 643 IPR046959 -
Cone9ag1338 657 Pfam Protein kinase domain 382 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1338 657 SUPERFAMILY Protein kinase-like (PK-like) 382 644 IPR011009 -
Cone9ag1338 657 Gene3D Transferase(Phosphotransferase) domain 1 457 654 - -
Cone9ag1338 657 Gene3D Ribonuclease Inhibitor 190 239 IPR032675 -
Cone9ag1338 657 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515(InterPro)
Cone9ag1338 657 Pfam Leucine Rich Repeat 99 116 IPR001611 GO:0005515(InterPro)
Cone9ag1338 657 FunFam Probable inactive receptor kinase At5g67200 34 144 - -
Cone9ag1338 657 FunFam Leucine-rich repeat receptor-like protein kinase 146 238 - -
Cone9ag1338 657 ProSiteProfiles Leucine-rich repeat profile. 99 121 IPR001611 GO:0005515(InterPro)
Cone9ag1338 657 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Cone9ag1338 657 MobiDBLite consensus disorder prediction 247 273 - -
Cone9ag1338 657 MobiDBLite consensus disorder prediction 253 273 - -
Cone9ag1338 657 Coils Coil 331 351 - -
Cone9ag1338 657 Gene3D Phosphorylase Kinase; domain 1 373 455 - -
Cone9ag1338 657 ProSiteProfiles Protein kinase domain profile. 378 645 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0662 Cone-Chr13:6608801 Cone9ag1338 Cone-Chr9:10055351 9.76E-135 dispersed
Cone19ag0659 Cone-Chr19:5611580 Cone9ag1338 Cone-Chr9:10055351 4.12E-131 dispersed
Cone7ag0796 Cone-Chr7:5641062 Cone9ag1338 Cone-Chr9:10055351 2.32E-57 dispersed
Cone9ag1338 Cone-Chr9:10055351 Cone12ag0265 Cone-Chr12:1407746 3.94E-49 dispersed
Cone9ag1338 Cone-Chr9:10055351 Cone9ag1347 Cone-Chr9:10099847 6.05E-15 proximal
Cone20ag0203 Cone-Chr20:874691 Cone9ag1338 Cone-Chr9:10055351 1.59E-207 wgd
Cone7ag1355 Cone-Chr7:9848049 Cone9ag1338 Cone-Chr9:10055351 1.36E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83213 PF07714 PK_Tyr_Ser-Thr 2.10E-45 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1338 - - - 0.0