Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1341 ATGGCCGTAGAGCTCATGATGGGTGGCGGTGGTTTTAGAGACGGTAATTTCTCATCATCATCATCACCATCAACGGCAGCGAAACTGGAAGAAAACGCCGTTAGAGAAGCGGCATCCGGCCTCGAAAGCGTCGAGAAGCTAATCCGTTTGCTCTCTAACGCTGCCGCCCAGCAGGAAACGGAAAAGGACAAGAGCAAGAGCAAGAGCAGAGACGACGATATGGAGATGGACTGTAAAGCCGTGGCGGACGTCGCCGTTTCGAAGTTCAAACGGGTTATTTCTCTCCTGGGCCGAACCCGGGTCGGACACGCCAGGTTCAGGCGCGCTCCTATCCCGTTTTGTGAGAGTCGCGACACGGCGCCTCTTTGTCCGACGCCTATCCAGCAGATCCCGCCGCCGCCTTCTTCTTCTTCTTACCGTTCATCTTCGAAAAACGGTGTGATTGAGAGGAAGGAATCGTTTAATACTACTACCATTAATTTCTCCTCCTACTCCTCTGCTCCCAATTCGTTCATGTCATCTTTGACCGGAGACACGGACAGTAAGCAGCAGCAGCAGTTGCCGTCGTCTTCGTCGGCAGCGTTTCAGATTACGAATCTGTCTCAGGTCTCCTCCGCCGGAAAACCTCCCCTGTCTTCTTCTTCGTTGAAACGGAAGTGTATCTCCGATAACATCGGTTCCGGCAAGTGCAGTGGGTCCCTAGGTCGCTGCCACTGTTCCAAGAAAAGAAAACTAAGATTAAAGAGGGTAGTAAGGGTTCCGGCAATAAGCTTGAAGCTATCAGATATTCCACCTGACGATTACTCATGGAGAAAGTATGGACAGAAGCCCATTAAAGGATCTCCACATCCAAGGGGATATTATAAGTGCAGTAGTATGAGAGGATGTCCAGCTCGGAAACATGTAGAGAGAGCACTAGACGATGCATCGATGCTTGTAGTAACGTATGAAGGGGAGCATAATCACGCTCTCCTCTCTGTTCAAGAGACTTCTAATCTCATACTTGAATCTTCATAG 1017 50.15 MAVELMMGGGGFRDGNFSSSSSPSTAAKLEENAVREAASGLESVEKLIRLLSNAAAQQETEKDKSKSKSRDDDMEMDCKAVADVAVSKFKRVISLLGRTRVGHARFRRAPIPFCESRDTAPLCPTPIQQIPPPPSSSSYRSSSKNGVIERKESFNTTTINFSSYSSAPNSFMSSLTGDTDSKQQQQLPSSSSAAFQITNLSQVSSAGKPPLSSSSLKRKCISDNIGSGKCSGSLGRCHCSKKRKLRLKRVVRVPAISLKLSDIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERALDDASMLVVTYEGEHNHALLSVQETSNLILESS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10068119 10070067 - Conep09aG0138200.1 Cone9ag1341 445504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1341 338 MobiDBLite consensus disorder prediction 1 31 - -
Cone9ag1341 338 FunFam WRKY transcription factor 65 248 325 - -
Cone9ag1341 338 MobiDBLite consensus disorder prediction 120 146 - -
Cone9ag1341 338 SUPERFAMILY WRKY DNA-binding domain 262 323 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1341 338 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 34 328 IPR044810 GO:0003700(InterPro)
Cone9ag1341 338 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1341 338 SMART WRKY_cls 264 324 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1341 338 MobiDBLite consensus disorder prediction 14 28 - -
Cone9ag1341 338 MobiDBLite consensus disorder prediction 172 192 - -
Cone9ag1341 338 MobiDBLite consensus disorder prediction 59 74 - -
Cone9ag1341 338 Coils Coil 41 61 - -
Cone9ag1341 338 Pfam WRKY DNA -binding domain 266 322 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1341 338 Pfam Plant zinc cluster domain 217 262 IPR018872 -
Cone9ag1341 338 Gene3D WRKY domain 251 324 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1341 338 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1113 Cone-Chr4:9616935 Cone9ag1341 Cone-Chr9:10068119 8.31E-54 dispersed
Cone7ag1018 Cone-Chr7:7867537 Cone9ag1341 Cone-Chr9:10068119 4.70E-55 dispersed
Cone7ag1766 Cone-Chr7:11645922 Cone9ag1341 Cone-Chr9:10068119 1.14E-56 dispersed
Cone9ag1134 Cone-Chr9:7884428 Cone9ag1341 Cone-Chr9:10068119 2.42E-26 dispersed
Cone9ag1341 Cone-Chr9:10068119 Cone1ag0014 Cone-Chr1:120101 1.12E-16 dispersed
Cone4ag1594 Cone-Chr4:12164332 Cone9ag1341 Cone-Chr9:10068119 1.19E-87 wgd
Cone6ag1414 Cone-Chr6:11365253 Cone9ag1341 Cone-Chr9:10068119 3.72E-186 wgd
Cone7ag1354 Cone-Chr7:9836188 Cone9ag1341 Cone-Chr9:10068119 3.56E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46894 PF04572 Gb3_synth 2.40E-25 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1341 - - - 0.0