Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag1360 | ATGCCCCTCCCAGCAGCAGACCACGACCAACCTCTCCTCCACGAACTTGTACCAGAAGACGACGAAGAAACCGCCTACGACCTGTCGGAAAAGGTCCGCGTTACCATCCCCAACGAATCCGGCTCCGACTCAGACGCGCCGCTGCCGTTCTCATGGAAGAAGCTCTGGCTCTACACCGGTCCGGGCTTTCTAATGAGCATAGCGTTTCTCGACCCAGGAAACCTGGAGGGCGATCTTCAGGCTGGCGCCATAGCCGGATACTCGCTTCTTTGGCTGCTTATGTGGGCCACAGCGATGGGGCTTCTGGTTCAGCTTTTGGCAGCTCGGCTCGGCGTGGCGACTGGGAGACACTTGGCTGAGCTGTGTAGAGAGGAGTATCCAACGTGGGCGAGGATGGTGTTGTGGGTCATGGCTGAGGTGGCTCTTATCGGAGCGGATATCCAGGAAGTCATAGGCAGTGCTATCGCGATTAAGATTTTGAGCAATGGGATTTTGCCTCTCTGGGGTGGTGTCATCATCACCGCTTTTGATTGCTTTATATTTCTCTTCCTTGAGAATTACGGCGTGAGGAAACTAGAAGCAGTGTTTGCTATCCTGATAGCAACAATGGGGATCTCTTTTGCATGGATGTTTGCCGACACTAAACCCAACGGCACTGAGCTCCTCCTCGGCATTTTGATCCCAAAGCTTAGTTCGAGAACAATAAGACAAGCAGTGGGAGTGGTAGGCTGCATTATAATGCCCCACAACGTATTCCTACACTCTGCCCTTGTCCAATCACGAGAAATCGATCATGGCAAAAAATCCCATGTCCAAGAAGCTCTTAGATACTACTCAATAGAGTCTACTCTAGCCCTTATAATCTCCTTTATCATCAACCTTTTCGTTACAACTGTTTTCGCCAAGGCCTTTTTGGGGACCGACTTAGCTGCTAGTATTGGGCTCATAAATGCCGGACAATATCTTGAAGACAAATACGGAGGCGGGCTTTTCCCCATCTTGTATATTTGGGCCATCGGGCTTTTAGCTGCTGGGCAGAGTAGCACGATTACAGGCACCTATGCCGGGCAGTTTATAATGGGTGGGTTTTTGAATTTGGGGATGAAGAAATGGCTTAGAGCTTTGATAACTCGAAGCTGTGCGATTATACCGACCATCATTGTTGCTCTTATTTTCGATTCTTCCGATCAAATGCTGGATGTCTTGAACGAATGGCTTAATGTTCTTCAGTCCATTCAGATCCCTTTTGCTCTCATTCCCCTTCTTTGTTTGGTTTCCAAAGAGCAACTCATGGGCACTTTCCGAATCGGGCCTCTTCTTAAGATGGTTTCGTGGCTTGTGACTGCATTGGTGATAGCGATAAACGGGTATCTTCTACTAGACTTCTTCTCCAATGAAGTAAACGGAGCGTTCTTCGGAACTGCAGTTTGCGCTTTTACGTCTGCATACGTTGCATTTATCGTCTACTTAGTGTCGAGAAGCGTGACATTCTGGAGCTCGTCCAATTTAATCCCACCTAAGTAG | 1524 | 48.82 | MPLPAADHDQPLLHELVPEDDEETAYDLSEKVRVTIPNESGSDSDAPLPFSWKKLWLYTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLVQLLAARLGVATGRHLAELCREEYPTWARMVLWVMAEVALIGADIQEVIGSAIAIKILSNGILPLWGGVIITAFDCFIFLFLENYGVRKLEAVFAILIATMGISFAWMFADTKPNGTELLLGILIPKLSSRTIRQAVGVVGCIIMPHNVFLHSALVQSREIDHGKKSHVQEALRYYSIESTLALIISFIINLFVTTVFAKAFLGTDLAASIGLINAGQYLEDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLGMKKWLRALITRSCAIIPTIIVALIFDSSDQMLDVLNEWLNVLQSIQIPFALIPLLCLVSKEQLMGTFRIGPLLKMVSWLVTALVIAINGYLLLDFFSNEVNGAFFGTAVCAFTSAYVAFIVYLVSRSVTFWSSSNLIPPK | 507 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 10187459 | 10190317 | + | Conep09aG0140100.1 | Cone9ag1360 | 445523 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag1360 | 507 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 43 | 495 | IPR001046 | GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER) | |
| Cone9ag1360 | 507 | PRINTS | Natural resistance-associated macrophage protein signature | 134 | 160 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | PRINTS | Natural resistance-associated macrophage protein signature | 189 | 210 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | PRINTS | Natural resistance-associated macrophage protein signature | 407 | 426 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | PRINTS | Natural resistance-associated macrophage protein signature | 238 | 261 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | PRINTS | Natural resistance-associated macrophage protein signature | 345 | 364 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | PRINTS | Natural resistance-associated macrophage protein signature | 164 | 183 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | PRINTS | Natural resistance-associated macrophage protein signature | 373 | 390 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 53 | 431 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | NCBIfam | Nramp family divalent metal transporter | 60 | 430 | - | - | |
| Cone9ag1360 | 507 | Hamap | Divalent metal cation transporter MntH [mntH]. | 39 | 463 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone9ag1360 | 507 | Pfam | Natural resistance-associated macrophage protein-like | 76 | 437 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone6ag1517 | Cone-Chr6:11979193 | Cone9ag1360 | Cone-Chr9:10187459 | 6.24E-98 | dispersed | |
| Cone12ag0154 | Cone-Chr12:785958 | Cone9ag1360 | Cone-Chr9:10187459 | 1.72E-285 | wgd | |
| Cone4ag1604 | Cone-Chr4:12204799 | Cone9ag1360 | Cone-Chr9:10187459 | 7.42E-259 | wgd | |
| Cone6ag1430 | Cone-Chr6:11472817 | Cone9ag1360 | Cone-Chr9:10187459 | 0 | wgd | |
| Cone7ag1346 | Cone-Chr7:9794788 | Cone9ag1360 | Cone-Chr9:10187459 | 1.93E-256 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag1360 | K21398 | - | rcu:8285616 | 825.083 |