Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1379 ATGGATACCTTATTTAGACTGTTCAGTAGCAGTAGTAGTACTCTTCAATCCGATCATCTTCATCTTGATCATCACCACCATCATCATCAATCTAACAACTCTAGCAGAACTTCAAGCAGCTCCAGATCAGAACTTCAATCTGATCATCACTACCTGCAACAAGATCATCATCATCAAAACGAAGAATCCTTGAACCATTTCAATGATTTCATGGAAGAAGAAGATTTCTCCTCCTCCAATTCTACTCATTATAACTACCCCTACTCTTCAACCACCGCCGCCACCACCATCACCACCGCCACCACTACCACTACTCCGACTCAAGCCGATCAGTATTTTTCCTACTCACCTTCTCATCATGACTTGATCAACTTTGAATTTTCCGGCAAGTGGTCCCACAACATGCTACTCCAGGCGGCTCAAGCAATAACAGAAAAGAACAGTACACGTGTCCAGCAACTTTTGTGGGCCCTCAATGAGCTAAGCTCACCGTACGGTGACATAGACCAGAAGCTCACAGCCTACTTCCTCAAGGGCCTGTTCACTCGCGTAACTGACTCCGGAGAACGAAGTTACCGGACTCTAACAGCCGCGTCGGAGAAATCCTCTTCCTTCGAATCGACGAGGAAAACCGTCTTGAAGTTTCAAGAGGTCAGCCCTTGGACTACGTTCGGGCACGTGTCAGCTAACGGTGCGATCATGGAAGTCTTCGAGAACGAATCGAAGCTTCATATCATCGATTTCAGCAACACGTTTTGTACTCAATGGCCTACTTTACTCGAAGCGATCGCGACTCGTACGGATGAAACACCGCATCTGAAGCTAACAACCGTGATCGCCACCAGGCATAGTGGAGGAGAATGGGGAGAGTCGCTGGCCGCGGCGCAGAAGGTCATGAAAGAAATAGGTGCGAGGATGGAGAAGTTCGCGAGGCTTATGGGAGTTCCGTTCAAGCTAAACGCTATATATCATTCCGGCGATCTTTCAGACCTGAACTTAGCGGAGTTAGATATTAAAGAAGACGAAGCGTTAGCGATTAACTGCATCGGCGCGTTACACTCAGTCGCTCCTATCAGCAACCGAAGAGATTATTTAATTTCGTTGTTTAGAAGCTTAAGGCCTAGAGTGATTACCGTGGTTGAAGAAGAAGCCGATTTGGATGTCGGAATCGACGGGATCGATTTCGCGAAAGGATTTCAAGAATGTTTGAGCTGGTTCAGGATTTACTTCGAGACGTTAGAGGAGAGCTTTCCGAGGGTGAGCAATGAGCGGTTGATGCTAGAGCGAGCGGCGGGAAGAGCGATCGTCGATCTGGTGGCGTGTCCGGCATCGGAATCTGTTGAGCGTCGGGAATCGGCGAAGCGGTGGATAGGACGGTTGACTGGGACTGGATTCACTACAGCGGCTTTTAGCGATGAAATATGTGACGACGTGCGCGCTCTGTTAAGGAGGTATAAGGAGGGATGGTCGATGGTACGGGGATCTGACGGCGTCGGAATATTCTTGGCTTGGAAGGATCAGCCGGTGGTTTGGGCGAGTGCATGGCGGCCGTGA 1554 49.03 MDTLFRLFSSSSSTLQSDHLHLDHHHHHHQSNNSSRTSSSSRSELQSDHHYLQQDHHHQNEESLNHFNDFMEEEDFSSSNSTHYNYPYSSTTAATTITTATTTTTPTQADQYFSYSPSHHDLINFEFSGKWSHNMLLQAAQAITEKNSTRVQQLLWALNELSSPYGDIDQKLTAYFLKGLFTRVTDSGERSYRTLTAASEKSSSFESTRKTVLKFQEVSPWTTFGHVSANGAIMEVFENESKLHIIDFSNTFCTQWPTLLEAIATRTDETPHLKLTTVIATRHSGGEWGESLAAAQKVMKEIGARMEKFARLMGVPFKLNAIYHSGDLSDLNLAELDIKEDEALAINCIGALHSVAPISNRRDYLISLFRSLRPRVITVVEEEADLDVGIDGIDFAKGFQECLSWFRIYFETLEESFPRVSNERLMLERAAGRAIVDLVACPASESVERRESAKRWIGRLTGTGFTTAAFSDEICDDVRALLRRYKEGWSMVRGSDGVGIFLAWKDQPVVWASAWRP 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10321643 10323673 - Conep09aG0142000.1 Cone9ag1379 445542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1379 517 MobiDBLite consensus disorder prediction 21 60 - -
Cone9ag1379 517 ProSiteProfiles GRAS family profile. 123 516 IPR005202 -
Cone9ag1379 517 MobiDBLite consensus disorder prediction 33 47 - -
Cone9ag1379 517 Pfam GRAS domain family 134 516 IPR005202 -
Cone9ag1379 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 73 515 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1463 Cone-Chr8:11245408 Cone9ag1379 Cone-Chr9:10321643 2.38E-50 dispersed
Cone9ag0274 Cone-Chr9:1182967 Cone9ag1379 Cone-Chr9:10321643 1.12E-35 dispersed
Cone9ag1379 Cone-Chr9:10321643 Cone4ag0701 Cone-Chr4:3628671 8.28E-31 dispersed
Cone12ag0168 Cone-Chr12:849079 Cone9ag1379 Cone-Chr9:10321643 1.12E-198 wgd
Cone6ag1458 Cone-Chr6:11652857 Cone9ag1379 Cone-Chr9:10321643 2.37E-290 wgd
Cone8ag0163 Cone-Chr8:841984 Cone9ag1379 Cone-Chr9:10321643 2.88E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46897 PF13925 Katanin_con80 1.90E-48 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1379 K27743 - rcu:8283369 658.292