Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1384 ATGGAGAGGTTTCTGGATGAGGATTTTACAGCGGTGAAGCCGAAGCATTCATCAGAGGAAGGGTTGCAGAATTGGAGGAAGCTATGTGGAATCGTCAAGAACAAAAAACGCAGGTTCCGTTTCACTGCTAATCTTTCCAAACGTATGGAAGCTGCTACCATGCGCCAGAACAACCAGGAGAAGTTGAGGGTTGCTGTCCTGGTCTCAAAAGCTGCAATCCAATTTATCCAAGGTGTCCGAATAAGCGACTATGTTGTCCCAGAGCCAGTTAAAGGTGCAGGTTTTCAAATCTGTGCTGATGAACTTGGCTCAATTGTAGAAAGCCACGATCAAAAGAAGCTCAAATTCCATGGTGGGGTCCATGGCATAGCAGAAAAGCTCTCCACATCTACAACAAAAGGGCTTGGTACTGATGATATCTATGCACTGAATCGTAGGGAAGAAATCTACGGAGCCAATAAATTCACTGAAAGTGAAACTGAGAGTTTCTTGGTATTTGTTTGGGAAGCCCTTCAAGACATGACTCTAATGATTCTAGGATTCTGTGCCTTTGTTTCTCTGATTGTCGGAATCATAACAGAAGGCTGGCCCCAGGGGTCCCACGATGGGCTCGGGATTGTTGCCAGCATCTTGCTGGTTGTGTTTGTAACGGCAACTAGTGATTATAGGCAGTCCTTACAGTTCAAGGATTTGGACAAGGAGAAGAAGAAGATCTCTGTTCAGGTCACAAGAAATGGATATAGGCAGAAATTATCTGTTTATGATTTACTCCCAGGAGATATTGTTCATCTCTTTATAGGAGACCAAGTGCCTGCAGATGGGCTATTTGTTTCGGGATTTTCGGTGTTAATAGATGAGTCAAGTTTAACGGGAGAAAGCGAGCCGGTAATGGCAACTGCTGAAAACCCTTTTCTTCTTTCGGGAACTAAAGTTCAAGATGGGTCATGTTTGATGTTAGTCACTACAGTTGGGATGAGAACCCAATGGGGTAAATTAATGGCTACTCTAAGTGAAGGCGGGGTGGATGAAACTCCATTACAAGTGAAACTAAACGGAGTAGCAACTATTATAGGAAAAATAGGTCTTTTCTTCGCAGTAGTCACTTTTGCCGTTTTGGTTCAAGGGCTACTTTGGCGGAAAATCAATGACAGGACCCACTGGAGTTGGTCTGGAGATGATGCAATGGCGATGTTGGAGTACTTTGCCATTGCTGTTACAATTGTTGTGGTTGCTGTTCCAGAAGGTCTTCCATTAGCTGTTACATTAAGTCTTGCCTTTGCCATGAAGAAGATGATGAATGATAAAGCTCTTGTTCGCCATCTTGCAGCTTGTGAAACTATGGGGTCCGCCACAAGTATTTGCAGTGATAAAACGGGAACGCTCACTACAAATCACATGACAGTAGTTAAATCATGCATTGGCATGATTGTCAAGGAAGTGGATAATAAACCCAATAATAACTCTTGTTCTGATTTATTCTCTGACTTACCTGATTCTACTCGGCAGCTTTTTCTCCAGTCAATTTTTAACAACACGGGAGGAGAAGTAGTTGTAAACAAAGATGGTAAGCTCGAGATATTAGGTACACCTACTGAAACTGCTTTGCTAGAGTTTGGGCTTGCAGTTGGAGGAGACTTTCAGGCCGAGAGAAAAGTGGTTCAGATGGTTAGAGTAGAGCCATTTAACTCTTCAAAAAAACGTATGGGGGTAGTGATAAAATTATCCGGAGGTAATAGTCGGGCTCACACTAAAGGTGCTTCTGAAATTATACTGGCCGATTGTGAGAAGGTAGTTAATTCAAAGGGTGAGATTGTTCCCTTAGATGACTTGTCCATGAGCCATTTAACTGAGACGATTAATCAATTTGCTAGTGAAGCTCTGCGGACTCTATGCCTTGCTTATATGGAGCTTGAAGGTGGATTCTCTGCTGATAAACCGATTCCGGTTTCTGGGTATACCTGTATAGGGATTGTTGGTATTAAAGATCCTGTTCGCCCAGGTGTCAAGGAATCTGTTGCAATTTGTCGTTCAGCTGGTATCACGGTCCGAATGGTTACGGGTGATAATATCATTACAGCTAAGGCCATTGCTAGAGAATGTGGGATTCTTACCGATGACGGTATAGCCATTGAGGGGCCTGATTTCAGGGAGAAAAATCAGGAACAGATGCTTGAACTTATTCCGAAAATTCAGGTGATGGCTCGATCTTCACCACTTGATAAGCATGTAATGGTGAAGCAATTAAGGACCACATTTGATGAGGTGGTTGCTGTGACTGGAGATGGAACAAACGATGCTCCGGCTCTTCACGAAGCTGATATTGGACTGGCAATGGGAATTGCCGGAACAGAGGTTGCTAAAGAGAGTGCTGATGTCATCATTTTGGATGATAATTTCTCTACTATAGTAACAGTAGGGAGATGGGGCCGGTCGGTCTACGTGAACATTCAAAAATTCGTACAGTTCCAGCTCACTGTTAACATCGTTGCTCTCATTATCAACTTCTCTTCAGCTTGTTTCACAGGGAAGGCTCCTCTTACAGCAGTCCAGCTTTTGTGGGTCAACATGATAATGGACACTCTAGGTGCATTAGCTCTTGCTACCGAGCCTCCAAATGACAGCTTAATGAAACGTCCCCCTGTTGGAAGAAGAGGAAACTTTATCAGTAAAGTCATGTGGAGGAACATCTTAGGCCAATCCTTGTACCAGTTACTGGTTCTATGGCTTCTTCAAGTGAAAGGAAAAAGGATTTTTGGTCTCGAGGGCCCAGATTCCGATCTTGTCCTCAATACACTTGTTTTCAACTCATTCGTGTTTTGTCAGCTTTTCAATGAGATAAACTCCCGGGAAATGGAGAAAATCAATGTCTTCGCAGGTATTCTTGGCAATTATGTGTTTGCGAGCGTAGTCGGTGCAACTCTGTTCTTTCAGATCATAATTGTTGAGTGTTTGGGAACTTTTGCTAACACTACGCCGTTGACTCTTACTCAATGGTATGTTAGTGTGTTCATTGGGTTTATAGGGATGCCTATTGCTGCTTGGTTAAAGACAGTCCAGGTATAA 3063 43.19 MERFLDEDFTAVKPKHSSEEGLQNWRKLCGIVKNKKRRFRFTANLSKRMEAATMRQNNQEKLRVAVLVSKAAIQFIQGVRISDYVVPEPVKGAGFQICADELGSIVESHDQKKLKFHGGVHGIAEKLSTSTTKGLGTDDIYALNRREEIYGANKFTESETESFLVFVWEALQDMTLMILGFCAFVSLIVGIITEGWPQGSHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISVQVTRNGYRQKLSVYDLLPGDIVHLFIGDQVPADGLFVSGFSVLIDESSLTGESEPVMATAENPFLLSGTKVQDGSCLMLVTTVGMRTQWGKLMATLSEGGVDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLLWRKINDRTHWSWSGDDAMAMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVVKSCIGMIVKEVDNKPNNNSCSDLFSDLPDSTRQLFLQSIFNNTGGEVVVNKDGKLEILGTPTETALLEFGLAVGGDFQAERKVVQMVRVEPFNSSKKRMGVVIKLSGGNSRAHTKGASEIILADCEKVVNSKGEIVPLDDLSMSHLTETINQFASEALRTLCLAYMELEGGFSADKPIPVSGYTCIGIVGIKDPVRPGVKESVAICRSAGITVRMVTGDNIITAKAIARECGILTDDGIAIEGPDFREKNQEQMLELIPKIQVMARSSPLDKHVMVKQLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGRWGRSVYVNIQKFVQFQLTVNIVALIINFSSACFTGKAPLTAVQLLWVNMIMDTLGALALATEPPNDSLMKRPPVGRRGNFISKVMWRNILGQSLYQLLVLWLLQVKGKRIFGLEGPDSDLVLNTLVFNSFVFCQLFNEINSREMEKINVFAGILGNYVFASVVGATLFFQIIIVECLGTFANTTPLTLTQWYVSVFIGFIGMPIAAWLKTVQV 1020
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 10346429 10350825 + Conep09aG0142500.1 Cone9ag1384 445547
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1384 1020 SUPERFAMILY HAD-like 453 864 IPR036412 -
Cone9ag1384 1020 Pfam E1-E2 ATPase 237 433 - -
Cone9ag1384 1020 SFLD p-type atpase 436 811 IPR044492 -
Cone9ag1384 1020 PRINTS P-type cation-transporting ATPase superfamily signature 759 778 - -
Cone9ag1384 1020 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Cone9ag1384 1020 PRINTS P-type cation-transporting ATPase superfamily signature 656 667 - -
Cone9ag1384 1020 PRINTS P-type cation-transporting ATPase superfamily signature 678 688 - -
Cone9ag1384 1020 PRINTS P-type cation-transporting ATPase superfamily signature 783 795 - -
Cone9ag1384 1020 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Cone9ag1384 1020 Pfam Cation transporting ATPase, C-terminus 844 1017 IPR006068 -
Cone9ag1384 1020 CDD P-type_ATPase_Ca_PMCA-like 143 892 - -
Cone9ag1384 1020 PANTHER CATION TRANSPORTING ATPASE 74 1019 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cone9ag1384 1020 FunFam Calcium-transporting ATPase 652 804 - -
Cone9ag1384 1020 NCBIfam calcium-translocating P-type ATPase, PMCA-type 108 1018 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Cone9ag1384 1020 Gene3D - 169 1016 - -
Cone9ag1384 1020 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Cone9ag1384 1020 SUPERFAMILY Calcium ATPase, transduction domain A 239 334 IPR008250 -
Cone9ag1384 1020 Gene3D - 17 77 - -
Cone9ag1384 1020 FunFam Calcium-transporting ATPase 776 1020 - -
Cone9ag1384 1020 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1018 IPR023298 -
Cone9ag1384 1020 Pfam Cation transport ATPase (P-type) 519 597 - -
Cone9ag1384 1020 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 668 IPR023299 GO:0000166(InterPro)
Cone9ag1384 1020 Gene3D - 464 663 IPR023299 GO:0000166(InterPro)
Cone9ag1384 1020 FunFam Calcium-transporting ATPase 464 663 - -
Cone9ag1384 1020 PRINTS H+-transporting ATPase (proton pump) signature 759 775 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone9ag1384 1020 PRINTS H+-transporting ATPase (proton pump) signature 791 816 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone9ag1384 1020 PRINTS H+-transporting ATPase (proton pump) signature 615 633 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone9ag1384 1020 SMART Cation_ATPase_N_a_2 119 191 IPR004014 -
Cone9ag1384 1020 Gene3D - 451 804 IPR023214 -
Cone9ag1384 1020 Gene3D - 144 337 - -
Cone9ag1384 1020 FunFam Calcium-transporting ATPase 17 77 - -
Cone9ag1384 1020 NCBIfam HAD-IC family P-type ATPase 729 841 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone9ag1384 1020 NCBIfam HAD-IC family P-type ATPase 206 483 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone9ag1384 1020 Pfam Cation transporter/ATPase, N-terminus 117 186 IPR004014 -
Cone9ag1384 1020 SFLD C1.7: P-type atpase like 436 811 - -
Cone9ag1384 1020 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516(InterPro)
Cone9ag1384 1020 FunFam Calcium-transporting ATPase 217 337 - -
Cone9ag1384 1020 Pfam haloacid dehalogenase-like hydrolase 653 773 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0285 Cone-Chr7:1209868 Cone9ag1384 Cone-Chr9:10346429 3.85E-257 dispersed
Cone9ag0775 Cone-Chr9:3710036 Cone9ag1384 Cone-Chr9:10346429 5.50E-17 dispersed
Cone4ag1612 Cone-Chr4:12258704 Cone9ag1384 Cone-Chr9:10346429 0 wgd
Cone6ag1463 Cone-Chr6:11673578 Cone9ag1384 Cone-Chr9:10346429 0 wgd
Cone7ag1339 Cone-Chr7:9747578 Cone9ag1384 Cone-Chr9:10346429 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1384 K01537 - csv:101212315 1632.85