Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1406 ATGGGTTGTTTCAACGATGACCTTGTTCTAGGGTTAGGATTATCGAGAAGCGCCGCCGTCCAAGAAAGTAGCGCACCAAAGGCAGTGGAGGCAGCGGCAATAACCGATCATCATCTTATGACACGGGCCCCGGCCAGTCTTTCCGACTTCGCGACCACTTTGACGTTGGGTTTATCCGGAGATCATCCTCTTGATCATCATCATCAGAATAACAACAACAACTATCAACCTTTGACTGATGTCAAGAAGGGTAGTTGTGATCAGGAAGCTTATTCGCCTCATAGCGGGGTTTCGAATTCGTTCTCTAATGGAGGTAAAGCAGTGAAGAGGGAGAGAGATGCTAGTAGTGAAGAATTGGAGATTGATAATCATCAGGGAGATGATCAGAGAGTCATGTCTTCAAGATTAGTAGGCAGTGATGAAGATGAAGATGGTATGAATTACTCTACTAATTGTTCTAGAAAGAAACTTAGGCTCACCAAAGAACAGTCTGCTCTCTTAGAAGAAAGCTTCAAACAGCACAGCACTCTCAACCCTAAAGAGAAGCAGACTTTAGCAAGGCAGTTGAATCTTCGGCCAAGACAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACGAAACTGAAGCAAACAGAAGTAGATTGTGAATTCCTAAAGAAGTGTTGCGAGAGTTTAACAGATGAGAACAAGAGATTACAGAAAGAAGTTCAAGAACTGAAGGCAATGAAAATTTCTCAGGCGACGTCCAATCTGTACATGAAACTGCCGGCAGCAACTCTAACCATGTGCCCTTCTTGTGAGAAGATTAATAATGGTAGGCTTTCTCCTAATCGTGGTGTTAATCCCAAAACCTCATTGATTTCCATGGCTGTTTCCAATAAGCCTCACTATTACAATCCCTTCACCAATCCTGCTGCTTGTTAA 927 43.47 MGCFNDDLVLGLGLSRSAAVQESSAPKAVEAAAITDHHLMTRAPASLSDFATTLTLGLSGDHPLDHHHQNNNNNYQPLTDVKKGSCDQEAYSPHSGVSNSFSNGGKAVKRERDASSEELEIDNHQGDDQRVMSSRLVGSDEDEDGMNYSTNCSRKKLRLTKEQSALLEESFKQHSTLNPKEKQTLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLTDENKRLQKEVQELKAMKISQATSNLYMKLPAATLTMCPSCEKINNGRLSPNRGVNPKTSLISMAVSNKPHYYNPFTNPAAC 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10475756 10477075 + Conep09aG0144700.1 Cone9ag1406 445569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1406 308 Gene3D - 145 215 - -
Cone9ag1406 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 54 290 IPR050762 -
Cone9ag1406 308 MobiDBLite consensus disorder prediction 62 149 - -
Cone9ag1406 308 Pfam Homeodomain 154 208 IPR001356 GO:0003677(InterPro)
Cone9ag1406 308 MobiDBLite consensus disorder prediction 91 105 - -
Cone9ag1406 308 CDD homeodomain 154 211 IPR001356 GO:0003677(InterPro)
Cone9ag1406 308 ProSitePatterns 'Homeobox' domain signature. 185 208 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone9ag1406 308 ProSiteProfiles 'Homeobox' domain profile. 150 210 IPR001356 GO:0003677(InterPro)
Cone9ag1406 308 SMART halz 210 253 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1406 308 SMART HOX_1 152 214 IPR001356 GO:0003677(InterPro)
Cone9ag1406 308 MobiDBLite consensus disorder prediction 106 142 - -
Cone9ag1406 308 SUPERFAMILY Homeodomain-like 140 211 IPR009057 -
Cone9ag1406 308 Coils Coil 216 243 - -
Cone9ag1406 308 FunFam Homeobox-leucine zipper protein 18 139 215 - -
Cone9ag1406 308 Pfam Homeobox associated leucine zipper 210 244 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0654 Cone-Chr6:3299663 Cone9ag1406 Cone-Chr9:10475756 8.88E-54 dispersed
Cone9ag0435 Cone-Chr9:2006434 Cone9ag1406 Cone-Chr9:10475756 4.07E-39 dispersed
Cone9ag0657 Cone-Chr9:3125555 Cone9ag1406 Cone-Chr9:10475756 9.94E-55 dispersed
Cone9ag1406 Cone-Chr9:10475756 Cone9ag1531 Cone-Chr9:11160124 1.48E-10 dispersed
Cone12ag0188 Cone-Chr12:964039 Cone9ag1406 Cone-Chr9:10475756 1.45E-74 wgd
Cone4ag1641 Cone-Chr4:12388560 Cone9ag1406 Cone-Chr9:10475756 2.11E-50 wgd
Cone6ag1484 Cone-Chr6:11792840 Cone9ag1406 Cone-Chr9:10475756 1.44E-167 wgd
Cone7ag1311 Cone-Chr7:9619411 Cone9ag1406 Cone-Chr9:10475756 6.72E-47 wgd
Cone8ag0182 Cone-Chr8:956996 Cone9ag1406 Cone-Chr9:10475756 8.82E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46900 PF06454 DUF1084 2.40E-146 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1406 K09338 - mdm:114821699 286.96