Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1416 ATGTGGAACAGATCTGGTGAAATTCCTGTTAGCTTAGCGAATTTGAGCAATCTACGTAGTTTGGACGTTTCGCTGAACGGTCTCACGGGAAAGTTTCATGAGAAGATCGCTGCAATACCTCTTGAATACGCGAATCTGAACGACAACTTCCTGGAAGGCGAAAGTCCAGAGGTTTTTGCTTTGAATCCTAAATTAAGATCGGTAAAACTCTTTGACAACAGTTTTTCAGGAGTTGTGCCAGAGTCATACGGTGAGTGCAGCTCTCTCTACTACATTCGAACCGAGAACAACGAACTCTCCGGCAAACTACCAGACAGTTTCTGGAATCTTCCAATGCTTGAACACCTAGAATTGAGAAACAACAGATTCAAAGGTAACAGATTATCTGGCCAGATTCCTTATCAGCTCAGTGACTTGCCGGTATTAACATATTTAGATCTTTCTAGAAACATACTTTCCGGCCAAATTCCGGTAAAGTTAACAAAGCTGAAGCTAAATCAATTCGATATATCAGTTAATAAACTGTACGAAAGAGTTCCGTTTGGTTTCGATCATGAACTGTTCCTTGCAAGCTTAATGGGCAACCCGAATCTTTGTAGCCCAGATTTGAAGCCACTTGCTCCTTGCTCCTTGCCGGAAACCGAAACAGGTCCCTCTGTATGTTATAATTATTTAATCCATATCCGCTCTAGTTCTTATCGGTTATGGGTAGTTAAATCCAAGTTTCATATATTCAATGGCGAGTGTATGAAGCCATGGAAGGTGGCTGCCTTTCAACGGATCAGATTCAATGAGGAAGACATAATCCCACATCTCACTAGTCGAAACTTAATTGGAGAAGGTGGATCCGGCCGTGTTTATGGAGTATGTCTTAAACCAGGTCATGTTGTCGCCGTAAAGAGACTTTGGAGTGGTAAGGAGGCAGATGCTGAACTTGTTTTCCGATCCGAGGTGGACTCATTGGGTCAGGTTCCCCACGTCAATATCGTGAAACTGCTCTGTAGTTTACGTGATGGTGAAGATAACAGAATTCTGGTGTATGAGTATATGGAAAATGGTAGCTTAGGTGACGCATTGCATGGCCATAGCGATTCCAATTTATTAGATTGGCAAAGGCGGTTTGATATAGCAGTTGGTACGGCTCAGGGCCTGGCTTATCTTCATCATGACTGTGTTCCAGCTATAGTGCACTGTGACATTAAGAGTAATAATGTACTCTTAGACGAAGAATTCAGGCCCAAATTGGCTGATTTCGGGTTGGCTAAGACATTGCAACGTGAGGGGGATCCTAGTCGTGATGTCATGTCTCGAGTTGCTGGGTCCTACGGCTACATTGCACCTGAGTATGCGTATACTATGAAAGTGACAGAGAAGAGTGATGCCTATAGTTCTGGTGTGGTTTTGATGGAAATGTTTACTGGTAAGAGGCCTAATGGTGCTTTCTGTGGAGAAAATGGTGATCTAGTGAAGTGGGTTAGAGGAACTGCTTTATCATGCTTTGCAGAAGAAAATGGCAAAGAGGAAGTATGTTGCGGTGATGTGGACAATCTTATAGATCCAAGAATGAAGCTATTTACATGTGATTTTGAACAGATTGAAAGAGTTTTGAATGTGGCTTTCCTTTGTACCGCGACATTACCCATCAATAGACCCTCTATGAAAAGGGTTGAGGAGCTTTTAAAAGACTAG 1689 42.57 MWNRSGEIPVSLANLSNLRSLDVSLNGLTGKFHEKIAAIPLEYANLNDNFLEGESPEVFALNPKLRSVKLFDNSFSGVVPESYGECSSLYYIRTENNELSGKLPDSFWNLPMLEHLELRNNRFKGNRLSGQIPYQLSDLPVLTYLDLSRNILSGQIPVKLTKLKLNQFDISVNKLYERVPFGFDHELFLASLMGNPNLCSPDLKPLAPCSLPETETGPSVCYNYLIHIRSSSYRLWVVKSKFHIFNGECMKPWKVAAFQRIRFNEEDIIPHLTSRNLIGEGGSGRVYGVCLKPGHVVAVKRLWSGKEADAELVFRSEVDSLGQVPHVNIVKLLCSLRDGEDNRILVYEYMENGSLGDALHGHSDSNLLDWQRRFDIAVGTAQGLAYLHHDCVPAIVHCDIKSNNVLLDEEFRPKLADFGLAKTLQREGDPSRDVMSRVAGSYGYIAPEYAYTMKVTEKSDAYSSGVVLMEMFTGKRPNGAFCGENGDLVKWVRGTALSCFAEENGKEEVCCGDVDNLIDPRMKLFTCDFEQIERVLNVAFLCTATLPINRPSMKRVEELLKD 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10501865 10504055 - Conep09aG0145700.1 Cone9ag1416 445579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1416 562 SUPERFAMILY Protein kinase-like (PK-like) 266 559 IPR011009 -
Cone9ag1416 562 Pfam Leucine rich repeat 63 123 IPR001611 GO:0005515(InterPro)
Cone9ag1416 562 SMART serkin_6 272 541 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1416 562 Gene3D Phosphorylase Kinase; domain 1 249 349 - -
Cone9ag1416 562 Gene3D Ribonuclease Inhibitor 2 125 IPR032675 -
Cone9ag1416 562 Gene3D Ribonuclease Inhibitor 126 210 IPR032675 -
Cone9ag1416 562 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 125 IPR050647 -
Cone9ag1416 562 SUPERFAMILY L domain-like 5 205 - -
Cone9ag1416 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1416 562 FunFam Leucine-rich repeat receptor-like protein kinase 350 562 - -
Cone9ag1416 562 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cone9ag1416 562 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524(InterPro)
Cone9ag1416 562 Pfam Protein kinase domain 275 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1416 562 Gene3D Transferase(Phosphotransferase) domain 1 350 562 - -
Cone9ag1416 562 ProSiteProfiles Protein kinase domain profile. 272 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag1416 Cone-Chr9:10501865 Cone14ag0207 Cone-Chr14:950468 2.91E-64 dispersed
Cone9ag1416 Cone-Chr9:10501865 Cone9ag1418 Cone-Chr9:10516382 4.92E-76 proximal
Cone12ag0193 Cone-Chr12:979107 Cone9ag1416 Cone-Chr9:10501865 1.13E-143 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone9ag1416 Cone-Chr9:10501865 1.02E-71 wgd
Cone20ag0578 Cone-Chr20:3319973 Cone9ag1416 Cone-Chr9:10501865 7.21E-50 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone9ag1416 Cone-Chr9:10501865 7.04E-63 wgd
Cone6ag1492 Cone-Chr6:11817691 Cone9ag1416 Cone-Chr9:10501865 1.55E-236 wgd
Cone7ag0877 Cone-Chr7:6792849 Cone9ag1416 Cone-Chr9:10501865 3.85E-73 wgd
Cone8ag0188 Cone-Chr8:982485 Cone9ag1416 Cone-Chr9:10501865 1.98E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83216 PF01554 MatE 1.90E-33 CL0222 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1416 - - - 0.0