Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1420 ATGGATCGGAATTCATCTGCTGAATGGTTTTATGAAATGGGATTAATGGAGCAAGATCCTGCATTTGTTCAAGAATACTTGACGAACTCATTCGACCATACACTTGATGAGTTCAATATCCATACCCTAAATTCGTCTGATCAATACAATCAGAGCTACTCTCTCATCAATCATAATTGTAAGAACAACCAGCTTAGTGCTTCATCTTCCTTTAATGAAGCAACTCCCCCTCAATCAGTGGTTGATCAAGATGATCAAAGGCCAACACAGCAGCTAAAGATCAACGGTTGGAGCTCTCCCATGGCTTCTGCTAATTCTTCTTCGACTTCTCCTAAGATTATTTCTTTTGACAAGTCTCATGGAACTACTACAACTCCCTGTGTTGATTATTCTGAGAAATTATATGGTGCGGGCGGAAACTGCACTACTACAACTACAACTGTGAAGCCAAAGACTGAGGTGGTGGTGGGGTCAGACGGAACCTGCATCAATTTCTCAACAGCTGCGACTAATGCTTATAGTAATTCTGATCATGATCAAACCAGCTCTAAGCAATATGCTCAAGGGTTTCACAAGAGGTCAGTAGCAATGAGTAGAACTCCTTTACATGCGCAAGATCACGTGCTAGCTGAGAGGAAACGTAGAGAGAAGCTTAACCAGAGGTTTATTGCTCTTTCAGCCCTTCTCCCTGGCTTAAAAAAGATGGACAAGGCTTCAGTTCTTGGTGATGCAGTAAAATATGTGAAGCAACTCCAAGAGCGTCAGAAAGTTCTAGAAGAACAGGCAACAAAAAGAACAGTTGAGTCAGTGGTTTACATGAAAAGAACCCATTTGTCTCCTGATCATGATGATAATTATGACATGACAACTTGTTCGTCTGATGAAGATTCTAGCACCTTTTCTGACCAACAACTTCCTCAAATAGAAGCAAAAGTATCAGACAAGGATATTCTTGTAAGGATTCATTGTGAGAAACACAAAGGGTGTTTATCGAACATTCTTAACGAGATCGAGAAGCTTCGTTTGACCATCATCTATAGCACTGTCTTGCCCTTTGGATGCTCGACTCTCGACATAACTATTGTTGCTAAGATGGAGGTTGAATTCTGCTTGACGGCAAAGGATCTTGTTACGAAGCTAAGGAATGCTTTAATGATGTCCAATTGA 1167 40.87 MDRNSSAEWFYEMGLMEQDPAFVQEYLTNSFDHTLDEFNIHTLNSSDQYNQSYSLINHNCKNNQLSASSSFNEATPPQSVVDQDDQRPTQQLKINGWSSPMASANSSSTSPKIISFDKSHGTTTTPCVDYSEKLYGAGGNCTTTTTTVKPKTEVVVGSDGTCINFSTAATNAYSNSDHDQTSSKQYAQGFHKRSVAMSRTPLHAQDHVLAERKRREKLNQRFIALSALLPGLKKMDKASVLGDAVKYVKQLQERQKVLEEQATKRTVESVVYMKRTHLSPDHDDNYDMTTCSSDEDSSTFSDQQLPQIEAKVSDKDILVRIHCEKHKGCLSNILNEIEKLRLTIIYSTVLPFGCSTLDITIVAKMEVEFCLTAKDLVTKLRNALMMSN 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10535519 10537192 - Conep09aG0146100.1 Cone9ag1420 445583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1420 388 SMART finulus 208 257 IPR011598 GO:0046983(InterPro)
Cone9ag1420 388 PANTHER BHLH TRANSCRIPTION FACTOR 16 385 IPR052610 -
Cone9ag1420 388 MobiDBLite consensus disorder prediction 67 87 - -
Cone9ag1420 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 273 IPR036638 GO:0046983(InterPro)
Cone9ag1420 388 CDD bHLH_AtNAI1_like 203 275 - -
Cone9ag1420 388 Gene3D - 200 265 IPR036638 GO:0046983(InterPro)
Cone9ag1420 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983(InterPro)
Cone9ag1420 388 Pfam Helix-loop-helix DNA-binding domain 207 252 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0195 Cone-Chr12:989911 Cone9ag1420 Cone-Chr9:10535519 7.03E-66 dispersed
Cone3ag1199 Cone-Chr3:30659651 Cone9ag1420 Cone-Chr9:10535519 6.82E-13 dispersed
Cone4ag1276 Cone-Chr4:10485093 Cone9ag1420 Cone-Chr9:10535519 3.07E-10 dispersed
Cone6ag1495 Cone-Chr6:11848771 Cone9ag1420 Cone-Chr9:10535519 2.16E-217 dispersed
Cone8ag0189 Cone-Chr8:991113 Cone9ag1420 Cone-Chr9:10535519 1.22E-63 dispersed
Cone8ag1047 Cone-Chr8:9609525 Cone9ag1420 Cone-Chr9:10535519 8.89E-62 dispersed
Cone9ag1420 Cone-Chr9:10535519 Cone9ag1422 Cone-Chr9:10561808 3.42E-145 dispersed
Cone9ag1419 Cone-Chr9:10528658 Cone9ag1420 Cone-Chr9:10535519 1.59E-74 tandem
Cone9ag1420 Cone-Chr9:10535519 Cone9ag1421 Cone-Chr9:10555416 8.17E-26 tandem
Cone7ag0875 Cone-Chr7:6768236 Cone9ag1420 Cone-Chr9:10535519 1.28E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46902 PF01762 Galactosyl_T 3.70E-47 CL0110 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1420 - - - 0.0