Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag1420 | ATGGATCGGAATTCATCTGCTGAATGGTTTTATGAAATGGGATTAATGGAGCAAGATCCTGCATTTGTTCAAGAATACTTGACGAACTCATTCGACCATACACTTGATGAGTTCAATATCCATACCCTAAATTCGTCTGATCAATACAATCAGAGCTACTCTCTCATCAATCATAATTGTAAGAACAACCAGCTTAGTGCTTCATCTTCCTTTAATGAAGCAACTCCCCCTCAATCAGTGGTTGATCAAGATGATCAAAGGCCAACACAGCAGCTAAAGATCAACGGTTGGAGCTCTCCCATGGCTTCTGCTAATTCTTCTTCGACTTCTCCTAAGATTATTTCTTTTGACAAGTCTCATGGAACTACTACAACTCCCTGTGTTGATTATTCTGAGAAATTATATGGTGCGGGCGGAAACTGCACTACTACAACTACAACTGTGAAGCCAAAGACTGAGGTGGTGGTGGGGTCAGACGGAACCTGCATCAATTTCTCAACAGCTGCGACTAATGCTTATAGTAATTCTGATCATGATCAAACCAGCTCTAAGCAATATGCTCAAGGGTTTCACAAGAGGTCAGTAGCAATGAGTAGAACTCCTTTACATGCGCAAGATCACGTGCTAGCTGAGAGGAAACGTAGAGAGAAGCTTAACCAGAGGTTTATTGCTCTTTCAGCCCTTCTCCCTGGCTTAAAAAAGATGGACAAGGCTTCAGTTCTTGGTGATGCAGTAAAATATGTGAAGCAACTCCAAGAGCGTCAGAAAGTTCTAGAAGAACAGGCAACAAAAAGAACAGTTGAGTCAGTGGTTTACATGAAAAGAACCCATTTGTCTCCTGATCATGATGATAATTATGACATGACAACTTGTTCGTCTGATGAAGATTCTAGCACCTTTTCTGACCAACAACTTCCTCAAATAGAAGCAAAAGTATCAGACAAGGATATTCTTGTAAGGATTCATTGTGAGAAACACAAAGGGTGTTTATCGAACATTCTTAACGAGATCGAGAAGCTTCGTTTGACCATCATCTATAGCACTGTCTTGCCCTTTGGATGCTCGACTCTCGACATAACTATTGTTGCTAAGATGGAGGTTGAATTCTGCTTGACGGCAAAGGATCTTGTTACGAAGCTAAGGAATGCTTTAATGATGTCCAATTGA | 1167 | 40.87 | MDRNSSAEWFYEMGLMEQDPAFVQEYLTNSFDHTLDEFNIHTLNSSDQYNQSYSLINHNCKNNQLSASSSFNEATPPQSVVDQDDQRPTQQLKINGWSSPMASANSSSTSPKIISFDKSHGTTTTPCVDYSEKLYGAGGNCTTTTTTVKPKTEVVVGSDGTCINFSTAATNAYSNSDHDQTSSKQYAQGFHKRSVAMSRTPLHAQDHVLAERKRREKLNQRFIALSALLPGLKKMDKASVLGDAVKYVKQLQERQKVLEEQATKRTVESVVYMKRTHLSPDHDDNYDMTTCSSDEDSSTFSDQQLPQIEAKVSDKDILVRIHCEKHKGCLSNILNEIEKLRLTIIYSTVLPFGCSTLDITIVAKMEVEFCLTAKDLVTKLRNALMMSN | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10535519 | 10537192 | - | Conep09aG0146100.1 | Cone9ag1420 | 445583 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag1420 | 388 | SMART | finulus | 208 | 257 | IPR011598 | GO:0046983(InterPro) | |
Cone9ag1420 | 388 | PANTHER | BHLH TRANSCRIPTION FACTOR | 16 | 385 | IPR052610 | - | |
Cone9ag1420 | 388 | MobiDBLite | consensus disorder prediction | 67 | 87 | - | - | |
Cone9ag1420 | 388 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 207 | 273 | IPR036638 | GO:0046983(InterPro) | |
Cone9ag1420 | 388 | CDD | bHLH_AtNAI1_like | 203 | 275 | - | - | |
Cone9ag1420 | 388 | Gene3D | - | 200 | 265 | IPR036638 | GO:0046983(InterPro) | |
Cone9ag1420 | 388 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 202 | 251 | IPR011598 | GO:0046983(InterPro) | |
Cone9ag1420 | 388 | Pfam | Helix-loop-helix DNA-binding domain | 207 | 252 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0195 | Cone-Chr12:989911 | Cone9ag1420 | Cone-Chr9:10535519 | 7.03E-66 | dispersed | |
Cone3ag1199 | Cone-Chr3:30659651 | Cone9ag1420 | Cone-Chr9:10535519 | 6.82E-13 | dispersed | |
Cone4ag1276 | Cone-Chr4:10485093 | Cone9ag1420 | Cone-Chr9:10535519 | 3.07E-10 | dispersed | |
Cone6ag1495 | Cone-Chr6:11848771 | Cone9ag1420 | Cone-Chr9:10535519 | 2.16E-217 | dispersed | |
Cone8ag0189 | Cone-Chr8:991113 | Cone9ag1420 | Cone-Chr9:10535519 | 1.22E-63 | dispersed | |
Cone8ag1047 | Cone-Chr8:9609525 | Cone9ag1420 | Cone-Chr9:10535519 | 8.89E-62 | dispersed | |
Cone9ag1420 | Cone-Chr9:10535519 | Cone9ag1422 | Cone-Chr9:10561808 | 3.42E-145 | dispersed | |
Cone9ag1419 | Cone-Chr9:10528658 | Cone9ag1420 | Cone-Chr9:10535519 | 1.59E-74 | tandem | |
Cone9ag1420 | Cone-Chr9:10535519 | Cone9ag1421 | Cone-Chr9:10555416 | 8.17E-26 | tandem | |
Cone7ag0875 | Cone-Chr7:6768236 | Cone9ag1420 | Cone-Chr9:10535519 | 1.28E-10 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46902 | PF01762 | Galactosyl_T | 3.70E-47 | CL0110 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag1420 | - | - | - | 0.0 |