Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1422 ATGGATCTGAATGCCGAATGGTTTGTTGAAATGGGATTGATGGATCAAGATCATGCATTTGCTCAAGCATACTTGATGAACTCACTCGACCATGCTCAGCTCGATGATCAGTTCAATATTCACACCCTTAATCCTTCTGATCAGTGTCAAAGCTACTCTCAGATCAATCCCAAAGCGGCAACGTATCATCACCATTATCACAATAATAATAATACCCTAATTAGTGCTTCATCTTCCATTAATGAAATTACACATTGTCTAACACTGGTTGATCAAGACGCTCGAAGGCCAGAAAAGCAGCAGAAGATCTACGGCCGGAATTCTCATATGGAAGCTTCTGCTAACTCTTCTTTAACTTCTCCCAAGATTATTTCATTCGAAAACTTTCATACTACTACTGTGAAGCCTAAGACTGAGGTAGTGGTGGGGTCAGATGGAATCTGCATCAATTTCCCAACGGATGTTATTGATGCTTATAGTAATTCGGATCATTGTCAAACCTCTAAGCAATATTGTCAAGGATTTCATAACAGGTCACTAGTAATGAGTAGAACTAATTTACATGCTCAAGATCACGTGATCGCTGAGAGGAAACGTAGGGGGAAGCTTAACCAGAGGTTTATTGCCCTCTCAGCCCTTCTTCCCGGCTTAAAAAAGATGGACAAGGCTTCAGTTCTTGGGGACGCAGTAAAGTACGTGAAGCAACTTCAGGAGCATCAGAAAGTCCTAGAAGAACAGGCAGCAAATAAAACAGCTGAATCAGTAATTTATTTGAAAAGAACCCATTTATCTAATGATCTTGATGATCATCATGACATGACTACTTGTTCATCCGGTGAAGATTCTAGTAGCTTGTCAGACCAAAGTCCACTCCCTCAAATTGACGCAAGAGTTTCAGACAAGGATGTTCTTGTAAGAATTCATTGTGAGAAACACAAAGGATGTCTAGCAAACATTCTTAATGAGATGGAGAAGCTTCAGTTGACCATCATCAATAGCACTGTCTTGCCCTTTGGATGTTCTACCCTCGATATAACAGTTGTCGCTAAGGTGAAAATTTCACTATACAATTAA 1074 40.04 MDLNAEWFVEMGLMDQDHAFAQAYLMNSLDHAQLDDQFNIHTLNPSDQCQSYSQINPKAATYHHHYHNNNNTLISASSSINEITHCLTLVDQDARRPEKQQKIYGRNSHMEASANSSLTSPKIISFENFHTTTVKPKTEVVVGSDGICINFPTDVIDAYSNSDHCQTSKQYCQGFHNRSLVMSRTNLHAQDHVIAERKRRGKLNQRFIALSALLPGLKKMDKASVLGDAVKYVKQLQEHQKVLEEQAANKTAESVIYLKRTHLSNDLDDHHDMTTCSSGEDSSSLSDQSPLPQIDARVSDKDVLVRIHCEKHKGCLANILNEMEKLQLTIINSTVLPFGCSTLDITVVAKVKISLYN 357
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 10561808 10563113 - Conep09aG0146500.1 Cone9ag1422 445585
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1422 357 Pfam Helix-loop-helix DNA-binding domain 192 237 IPR011598 GO:0046983(InterPro)
Cone9ag1422 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 253 IPR036638 GO:0046983(InterPro)
Cone9ag1422 357 CDD bHLH_AtNAI1_like 188 260 - -
Cone9ag1422 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983(InterPro)
Cone9ag1422 357 SMART finulus 193 242 IPR011598 GO:0046983(InterPro)
Cone9ag1422 357 Coils Coil 233 253 - -
Cone9ag1422 357 Gene3D - 184 249 IPR036638 GO:0046983(InterPro)
Cone9ag1422 357 MobiDBLite consensus disorder prediction 269 291 - -
Cone9ag1422 357 PANTHER BHLH TRANSCRIPTION FACTOR 14 352 IPR052610 -
Cone9ag1422 357 MobiDBLite consensus disorder prediction 277 291 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1496 Cone-Chr6:11857675 Cone9ag1422 Cone-Chr9:10561808 3.11E-173 dispersed
Cone9ag1419 Cone-Chr9:10528658 Cone9ag1422 Cone-Chr9:10561808 3.77E-74 dispersed
Cone9ag1420 Cone-Chr9:10535519 Cone9ag1422 Cone-Chr9:10561808 3.42E-145 dispersed
Cone9ag1422 Cone-Chr9:10561808 Cone6ag0259 Cone-Chr6:1190014 2.76E-06 dispersed
Cone9ag1422 Cone-Chr9:10561808 Cone9ag1430 Cone-Chr9:10624747 9.41E-07 proximal
Cone9ag1421 Cone-Chr9:10555416 Cone9ag1422 Cone-Chr9:10561808 1.40E-28 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46903 PF08323 Glyco_transf_5 1.20E-47 CL0113 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1422 - - - 0.0