Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1430 ATGGAGCTAACAGATCAACATGAGTTCTTAGAGGAACTGCTACTACTGCAGGGCTCGAGAAGAGATCATCATCCAGGTTGGAATACTAATCATAGTAATAGCTCGTACCACTCCACTAATGAACTTATCACTGAGTTCTTCTCTAATGGGTGGAACTTGATCTATAATAACTTTGATGAAAACTCTTGGATCAATCCTCCATTTACCGGATTAATCCCTAGCCCGTTTACGGACTTGGATCAAATTCAAGACCAAGCGTTCACTTTTGTTCAAGGATTGAGTACGGTGCCTCCGCTCGATCCTTCGTACACCACAAGCAATGTTGATGGCCCTTCATTTTTATCCCAAGATCATCATGTTCATGACATACATCCTAACCCTAATTGTTCAGATCATGATCAAGGTCATATTGGTCATTTTCTTGGTAATAGTGATCATCATATGGAACAAGCTGGTGGTGGTGGTGATGATCATATGGAACAGGCTGCAGGTACTTTTGAAATGGGTTCATGTGGTGATCAAAAGATCAAGATCAAGAGCAAGAGTAAGAAGCTTCAAGATCAACCTTCTAAGAATTTAATGGCAGAAAGAAGACGGAGAAAGCGGTTGAATGATCGTCTCTCGATGCTCCGATCGATAGTCCCCAAGATAAGCAAGATGGATAGAACTTCTATACTTGGAGATACGATAGAGTACATGAAAGAACTTCTAGAGAGAATTGAAAACTTGAAAGAGAAGGAACTGTTAAGTGATGATAAGGGTCAAAATCAAATTATAAGCAGCTTCATGGGGTCTTCCAAAGATTCAAAACCCAGTGAAGTGATTGTAAGAACTTCCCCTAAGTTCGATGTGGCGAAGAGAGAGATGGAAACGAGGATAGAGATAAGCTGCGGAACAAGGCCGGGGTTGCTGTTATCTACAGTGAGCACACTTGAAGCTCTAGGCCTTGAGATTCAACAAGGTGTTATTAGTTGCTTCAATGATTTCTCTGTGCAACTTTCTTGCTCTGAGGGAGCTTCACAGAAGGCAGTGGTGAGTTCAGAAGATATAAAGCAGGAACTATTCAGAAGTGCAGGATATGGAGGCAAATGTTTATAA 1098 41.26 MELTDQHEFLEELLLLQGSRRDHHPGWNTNHSNSSYHSTNELITEFFSNGWNLIYNNFDENSWINPPFTGLIPSPFTDLDQIQDQAFTFVQGLSTVPPLDPSYTTSNVDGPSFLSQDHHVHDIHPNPNCSDHDQGHIGHFLGNSDHHMEQAGGGGDDHMEQAAGTFEMGSCGDQKIKIKSKSKKLQDQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIEYMKELLERIENLKEKELLSDDKGQNQIISSFMGSSKDSKPSEVIVRTSPKFDVAKREMETRIEISCGTRPGLLLSTVSTLEALGLEIQQGVISCFNDFSVQLSCSEGASQKAVVSSEDIKQELFRSAGYGGKCL 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10624747 10626139 - Conep09aG0147300.1 Cone9ag1430 445593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1430 365 CDD ACT_UUR-ACR-like 291 333 - -
Cone9ag1430 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 246 IPR036638 GO:0046983(InterPro)
Cone9ag1430 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983(InterPro)
Cone9ag1430 365 Gene3D - 195 275 IPR036638 GO:0046983(InterPro)
Cone9ag1430 365 SMART finulus 193 242 IPR011598 GO:0046983(InterPro)
Cone9ag1430 365 Pfam Helix-loop-helix DNA-binding domain 194 236 IPR011598 GO:0046983(InterPro)
Cone9ag1430 365 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 130 360 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone9ag1430 365 MobiDBLite consensus disorder prediction 177 202 - -
Cone9ag1430 365 Coils Coil 226 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0875 Cone-Chr7:6768236 Cone9ag1430 Cone-Chr9:10624747 4.70E-70 dispersed
Cone9ag1422 Cone-Chr9:10561808 Cone9ag1430 Cone-Chr9:10624747 9.41E-07 proximal
Cone17ag1159 Cone-Chr17:8553316 Cone9ag1430 Cone-Chr9:10624747 8.05E-56 wgd
Cone20ag0570 Cone-Chr20:3250453 Cone9ag1430 Cone-Chr9:10624747 3.65E-59 wgd
Cone4ag1276 Cone-Chr4:10485093 Cone9ag1430 Cone-Chr9:10624747 8.85E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46905 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1430 - - - 0.0