Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1431 ATGGCGTCGGCTCTGTTAGCCAGTCGAAATGAACCGGCGTGGGGTGAAGGGAAGGTTCATATGAGGAATTACGGTAACAACGTGATCAGTAGTAGTACCACCTCTAATAATCCATTTCTGAAGCTAAACCCTAATGCGTACTCATCATCAAGCCATAATGCCGGCTGGAAAAGCAGCCATGAGAATCAGCGTCTAAGCACTGTCCATTTCAGGAAGAGTGAAGGTAAAACGCCGGTTAGGACAGCATTTGATCCACCGGTTCGGAAATTGCAGAAAGCCAGTGAGGTGAAGAAAGAGCAGTCTGATGGAGGTTATGTGACCTTCAATCTTAGGGCCCATTCGAGAGGGGAGTTGAAGGAGCTGAAGCAACGCTTGACATCGGAGCTTGAACAGGTCCGTAGGTTGAGAAACCGGATCGTGTTAAACGATTTCGGATCAATGTGCAGATTTCCTGTTTCTCAGTACTCAGAAATCCGGCCTCAAGTGAAAGAGAAAACGACGCCTGTAACAGCAAGCGAGTTCTATGCGGTCGCTTCTGAGCTTGAAAATGCAAAAAAGACCAAGAAGAAAAAGAATGAAACGGAGGATCCGATCGTAAACAAGAAAGGCTCTGGAATTAAACGGAAAAATCACTTCGAGTCAGTTAAGCATCCAAAGAAGCCCGCCGTTGATCCAACGGCTGAAAGAACAGTAAGCACAATGATGAAAAGATGCGGTGTGATCTTGACGAAATTGATGACGCATAAACACGGCTGGGTTTTCAATAAACCTGTAGATGTGGTCGGACTAAAGCTCCACAATTACCACCTGATCGTTTCTAAACCTATGGATCTAGGCACAGTGAAGTCGAATCTTGAAAAGCATCTCTACAGTTCGCCCATGGATTTCGCTTCAGATGTTAGATTGACCTTTAACAATGCATTGCTTTACAATCCTCAAGGCACTGACGTAAATCTCATGGCCAATCTGCTCTTATCTCGTTTTGATGGAATGTTCAACCCGGCCTATGAGAAGTTCAAATCAGAGCACAGGCAACAAGCCGTTCAAAATATGGTGTCGGAGAGAATCAACAAAGCTCCTTCCCCACCACCACCTGTTCGGGCCCAAATTCCACCGGGCCAAGCCCAGGTGCAGACCCAGATGTTAATAGACTCAAGCCCTGCCACAAAGTCAGTGAGGTTGCTCAAACCGAAAGCAAAGGATCTGAACAAGAGGGAAATGAGCATGGAAGAGAAGACAATGTTAGGGATGGGTTTGCAGAGCCTGCCACCTGAGAAGATGGGTCAGTTAGTTCATATATTGAGGAAAAGAAATGGGGATTTGGCTCAGGATGGGGATGAAATTGAGCTTGATATTGAAGCGATTGATACAGAGACGTTATGGGAGCTTGATCGGTTCGTCACCAATTATAGAAAGATGCTAAGCAAGATCAAAAGGCAGGAGGTTATGAATATGAACAACTACCCCGTTTCAGCTTCCCAAACCAGCTCTAAGTCTCCAAGGAGTGAGAAAGAGGAAAATTTTACTGCTGCTGCACAGAAGAGCAAGAAAGGAGTTGAGTTTGAGGAGGAATATGTCGACATTGGGGAAGAGATTCCTATGAGTAATTTCCCACCTGTGGTGATTGATAAGGATCCCAATGGGTCTAGTGCCTCTAGTACTTCAAGCTCTTGTAGGGATTCCTCTTCATCTAGTGATTCTGGTTCAGGTAGTTCAACCGGTAGTGATTCAGGAGATGATGATTGTGCAAAATCGCCTTGTGCTGTGCAGAGAGAAGCGATTATGAGTTGTTTAATTGAAGAAGGCTTTACAAGCAAATCTATAGTAAATCATGGGCAAAATTTCCATCTTGCTTTAGGGGCAACGGTTGTTACCCTATCGTGTATCGATCAATCAATGACACATCCCATGTGA 1914 45.04 MASALLASRNEPAWGEGKVHMRNYGNNVISSSTTSNNPFLKLNPNAYSSSSHNAGWKSSHENQRLSTVHFRKSEGKTPVRTAFDPPVRKLQKASEVKKEQSDGGYVTFNLRAHSRGELKELKQRLTSELEQVRRLRNRIVLNDFGSMCRFPVSQYSEIRPQVKEKTTPVTASEFYAVASELENAKKTKKKKNETEDPIVNKKGSGIKRKNHFESVKHPKKPAVDPTAERTVSTMMKRCGVILTKLMTHKHGWVFNKPVDVVGLKLHNYHLIVSKPMDLGTVKSNLEKHLYSSPMDFASDVRLTFNNALLYNPQGTDVNLMANLLLSRFDGMFNPAYEKFKSEHRQQAVQNMVSERINKAPSPPPPVRAQIPPGQAQVQTQMLIDSSPATKSVRLLKPKAKDLNKREMSMEEKTMLGMGLQSLPPEKMGQLVHILRKRNGDLAQDGDEIELDIEAIDTETLWELDRFVTNYRKMLSKIKRQEVMNMNNYPVSASQTSSKSPRSEKEENFTAAAQKSKKGVEFEEEYVDIGEEIPMSNFPPVVIDKDPNGSSASSTSSSCRDSSSSSDSGSGSSTGSDSGDDDCAKSPCAVQREAIMSCLIEEGFTSKSIVNHGQNFHLALGATVVTLSCIDQSMTHPM 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10638032 10641559 + Conep09aG0147400.1 Cone9ag1431 445594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1431 637 SUPERFAMILY Bromodomain 213 338 IPR036427 GO:0005515(InterPro)
Cone9ag1431 637 MobiDBLite consensus disorder prediction 488 515 - -
Cone9ag1431 637 Gene3D - 179 354 IPR036427 GO:0005515(InterPro)
Cone9ag1431 637 Gene3D - 400 477 IPR038336 -
Cone9ag1431 637 MobiDBLite consensus disorder prediction 546 579 - -
Cone9ag1431 637 ProSiteProfiles NET domain profile. 397 478 IPR027353 -
Cone9ag1431 637 ProSiteProfiles Bromodomain profile. 246 318 IPR001487 GO:0005515(InterPro)
Cone9ag1431 637 SMART bromo_6 227 337 IPR001487 GO:0005515(InterPro)
Cone9ag1431 637 MobiDBLite consensus disorder prediction 499 515 - -
Cone9ag1431 637 Coils Coil 115 138 - -
Cone9ag1431 637 PANTHER OSJNBA0053K19.4 PROTEIN 85 577 - -
Cone9ag1431 637 Pfam Bromodomain extra-terminal - transcription regulation 406 468 IPR027353 -
Cone9ag1431 637 Pfam Bromodomain 241 320 IPR001487 GO:0005515(InterPro)
Cone9ag1431 637 MobiDBLite consensus disorder prediction 536 584 - -
Cone9ag1431 637 PRINTS Bromodomain signature 265 281 IPR001487 GO:0005515(InterPro)
Cone9ag1431 637 PRINTS Bromodomain signature 299 318 IPR001487 GO:0005515(InterPro)
Cone9ag1431 637 PRINTS Bromodomain signature 281 299 IPR001487 GO:0005515(InterPro)
Cone9ag1431 637 PRINTS Bromodomain signature 249 262 IPR001487 GO:0005515(InterPro)
Cone9ag1431 637 MobiDBLite consensus disorder prediction 186 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1431 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1082 Cone-Chr10:7506485 Cone9ag1431 Cone-Chr9:10638032 4.28E-79 dispersed
Cone8ag1543 Cone-Chr8:11580515 Cone9ag1431 Cone-Chr9:10638032 3.55E-43 dispersed
Cone12ag1010 Cone-Chr12:8536295 Cone9ag1431 Cone-Chr9:10638032 1.23E-68 wgd
Cone3ag1069 Cone-Chr3:29356971 Cone9ag1431 Cone-Chr9:10638032 1.92E-75 wgd
Cone6ag1507 Cone-Chr6:11925569 Cone9ag1431 Cone-Chr9:10638032 6.68E-29 wgd
Cone8ag1037 Cone-Chr8:9570865 Cone9ag1431 Cone-Chr9:10638032 2.00E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054240 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1