Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1445 ATGATGGCGAGGGAGAAGATTAAGATAAGGAAGATAGACAACACGACGGCGAGACAGGTCACCTTCTCAAAGCGGCGGCGCGGTTTGTTTAAGAAGGCTGAGGAGCTCTCCGTTCTCTGTGATGCTGACGTCGCCCTCATCATCTTCTCCTCCACTGGAAAGCTCTTTGAGTACTCTAGCTCAAGTATGAAGGAGATTCTAGAGAAGCACAATTTGCACCCTAAGAATATCCAGAAGTTGCAACAACCATCTCTTGAGTTGCAGTTGGTAGAAAACAGCAACCGCTGTAGGCTGAACCAGGAAATTGCTGAGAAAAGTCATCAATTAAGGCAGATGAGGGGAGAGGAACTACAAGAACTGACTATAGAACAACTACAGCAGCTTGAGAAATCCCTCGAATCTGGCCTGACCCGCGTCATTGCAAAAAAGGGTGCAAAGATTATGGAAGAAATCACTGATCTCCAAACAAAGGGCATGCAATTGATGGAAGAGAACGAGCGATTAAGACACCAAGTGGTAGAGATAACCAATGGATGGGGCCGGAATGTCGGGACTGACTCGGAAGGCAATGTGGTAACCGATAAGGAAGGGGGCGGTCAGTCATCAGAATCTGTCACCGACTTCTGCAACTCCATTACTTGCCCCCCTCGCGATTATGAAAGCTCTGATACCTCTTTGAAGTTGGGGCTACCATACTCAGGCTGA 705 47.8 MMAREKIKIRKIDNTTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSSSMKEILEKHNLHPKNIQKLQQPSLELQLVENSNRCRLNQEIAEKSHQLRQMRGEELQELTIEQLQQLEKSLESGLTRVIAKKGAKIMEEITDLQTKGMQLMEENERLRHQVVEITNGWGRNVGTDSEGNVVTDKEGGGQSSESVTDFCNSITCPPRDYESSDTSLKLGLPYSG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10720623 10723748 - Conep09aG0148800.1 Cone9ag1445 445608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1445 234 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone9ag1445 234 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 Coils Coil 151 171 - -
Cone9ag1445 234 MobiDBLite consensus disorder prediction 179 209 - -
Cone9ag1445 234 Pfam K-box region 97 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone9ag1445 234 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone9ag1445 234 SMART madsneu2 2 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 FunFam Transcription factor, MADS-box 14 84 - -
Cone9ag1445 234 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 Gene3D - 14 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag1445 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1602 Cone-Chr5:11253341 Cone9ag1445 Cone-Chr9:10720623 9.95E-17 dispersed
Cone6ag0933 Cone-Chr6:4798470 Cone9ag1445 Cone-Chr9:10720623 1.59E-31 dispersed
Cone7ag0871 Cone-Chr7:6703827 Cone9ag1445 Cone-Chr9:10720623 2.16E-22 dispersed
Cone8ag0833 Cone-Chr8:8345059 Cone9ag1445 Cone-Chr9:10720623 6.50E-16 dispersed
Cone9ag0936 Cone-Chr9:4616470 Cone9ag1445 Cone-Chr9:10720623 4.08E-31 dispersed
Cone12ag0994 Cone-Chr12:8469668 Cone9ag1445 Cone-Chr9:10720623 1.17E-39 wgd
Cone20ag0555 Cone-Chr20:3087265 Cone9ag1445 Cone-Chr9:10720623 6.10E-61 wgd
Cone4ag1298 Cone-Chr4:10714434 Cone9ag1445 Cone-Chr9:10720623 5.72E-68 wgd
Cone6ag1530 Cone-Chr6:12035959 Cone9ag1445 Cone-Chr9:10720623 5.14E-100 wgd
Cone7ag0856 Cone-Chr7:6546748 Cone9ag1445 Cone-Chr9:10720623 5.38E-73 wgd
Cone8ag1021 Cone-Chr8:9485806 Cone9ag1445 Cone-Chr9:10720623 2.27E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46906 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1445 - - - 0.0