Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1454 ATGGCAGAAAGTTCTTATTGTGCCAACTTAGACCTTCTTCTCTGTGAAGAAGATGCAGATATCTGCTATGATACGTTTTGGCACCATCAAGAACCGAGCTTTGACAACGTTGGTGGATCAGAATCTGTAAAGGGTGTTATCTTGTTGCATAGTGAAGAGAGAGTGAAAGAAATGGTTGAGAGAGAGAGAGAGCATTTGCCTAGAGATGATTACTTAAAGAGATTGCGTAGTGGAGACTTGGATTTGAGCTTTAGAAGAGGGACCATTGATTGGATTTTCAAGGTTTATACTCATTTCAGCTTTAGACCACCATGCATCTTTTTAGCCGTGAACTACTTGGATCGGTTTCTTTCGACTTATCAATTGCCTAGGGGCAAAAGTTGGAGTGTACAATTAGCATCTGTAGCTTGTTTATCATTAGCTGCCAAAATGGAGGAGAAAAATGTTCCGAAATATGTAGATCTTCAGGTGGGAGAACCTGTATTTGTTTTCGAGTCTAAATCGATAAGGAGAATGGAGTCTCTTGTGTTGAACACATTGAAATGGAAAATGCAAGCTATTACACCTTGCTCTTATATCGACTACTTTCTAAGCAAGAACATGGACATTGATCCTCATCATAGTTCCTTGAAACTTGCTTTATCTAAGTCAGTCCAACTCATATTGAGCATGATAAAAGGTATTGATTTCTTGGAATTCAGGCCTTCTGAAATTGCTTCAGCTGTGGCAATTTCAGTTTCAGGAGGAAGTGATAAGGAAAATCCCTGTTTTGTATATGTTGAGAAGGGGAGAGTGGTGAAGTGTGTGGAGTTGATCAAGGATTTCTCGTTGATCAGCGGGATGGGGCATCGGGTTGTGGGTTCAGAAAGCCCGGCAGGAGTTTTGGATGCCGCGTGTTTGAGCTATAAAAGTGATGAATTAACAACAGTTGGGTCATGTGCAAATTCTTCTTCACATAGTAAGAGGGAGAGGGAGAGGTAA 981 40.77 MAESSYCANLDLLLCEEDADICYDTFWHHQEPSFDNVGGSESVKGVILLHSEERVKEMVEREREHLPRDDYLKRLRSGDLDLSFRRGTIDWIFKVYTHFSFRPPCIFLAVNYLDRFLSTYQLPRGKSWSVQLASVACLSLAAKMEEKNVPKYVDLQVGEPVFVFESKSIRRMESLVLNTLKWKMQAITPCSYIDYFLSKNMDIDPHHSSLKLALSKSVQLILSMIKGIDFLEFRPSEIASAVAISVSGGSDKENPCFVYVEKGRVVKCVELIKDFSLISGMGHRVVGSESPAGVLDAACLSYKSDELTTVGSCANSSSHSKRERER 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10785867 10787443 + Conep09aG0149700.1 Cone9ag1454 445617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1454 326 Gene3D - 68 185 - -
Cone9ag1454 326 SUPERFAMILY Cyclin-like 50 184 IPR036915 -
Cone9ag1454 326 PANTHER CYCLINS 54 246 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone9ag1454 326 SMART cyclin_7 90 178 IPR013763 -
Cone9ag1454 326 Pfam Cyclin, C-terminal domain 187 276 IPR004367 -
Cone9ag1454 326 CDD CYCLIN_AtCycD-like_rpt1 85 182 - -
Cone9ag1454 326 FunFam D6-type cyclin 68 180 - -
Cone9ag1454 326 CDD CYCLIN_AtCycD-like_rpt2 187 272 - -
Cone9ag1454 326 Pfam Cyclin, N-terminal domain 55 184 IPR006671 -
Cone9ag1454 326 FunFam D6-type cyclin 181 270 - -
Cone9ag1454 326 Gene3D - 56 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1351 Cone-Chr7:9821020 Cone9ag1454 Cone-Chr9:10785867 4.24E-36 dispersed
Cone8ag1114 Cone-Chr8:9891151 Cone9ag1454 Cone-Chr9:10785867 7.13E-35 dispersed
Cone8ag1477 Cone-Chr8:11289833 Cone9ag1454 Cone-Chr9:10785867 1.44E-26 dispersed
Cone9ag1376 Cone-Chr9:10309420 Cone9ag1454 Cone-Chr9:10785867 1.02E-33 dispersed
Cone17ag1189 Cone-Chr17:8708758 Cone9ag1454 Cone-Chr9:10785867 1.01E-78 wgd
Cone20ag0545 Cone-Chr20:3036345 Cone9ag1454 Cone-Chr9:10785867 1.74E-80 wgd
Cone4ag1308 Cone-Chr4:10767744 Cone9ag1454 Cone-Chr9:10785867 1.06E-87 wgd
Cone6ag1538 Cone-Chr6:12087182 Cone9ag1454 Cone-Chr9:10785867 1.84E-199 wgd
Cone7ag0848 Cone-Chr7:6444069 Cone9ag1454 Cone-Chr9:10785867 2.39E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1454 K18810 - rcu:8267059 332.798