Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1461 ATGCCCGACTCTTCCTTCGCTCCTTTATGTCCCGACCAATTGCCGCCGCCGCCGCCACTTCCACTGGTATTATCGTCTCGACCTCGACAGGATTTTCTCGATGGAGATGAAGGACCGATTCTGGACCATCCGATCTGGTACATAAACACCATCGGTTTGCAACAGTCTGCAATCGATACGATCTCTATGTTGAAGTACAAGAAAGGTGAGGGCTTAATAGATGGAACAGACTGCTCAATTTGCCTAGGTGAATTTCAAGAAGAAGAAAGCCTTAGGCTTTTACCTAAGTGTAGCCATGCTTTTCACCTCCCTTGTATTGATACCTGGTTAAGATCACATAAGAATTGCCCCTTATGTAGAGCTCCTATATTTGCCAATAATACTGGCCCTCATTTGGATGGTTCTAGGTCTAGAGATGAAACTCGTATCGAAATTCTGCAGGGTAGTAACGGTATTTCTGATCAGGGGAATAATCGGATTGATTCTAATGTGGATGTAGTTGATAACATGTTGCAGAGTGATAATGGAAGGGATGAAGATTCATGGTTTGATGAAATTCCTAGGTGGAATATGGGCAATTTTCAGCGGAAGGTATTAAGTGATTTGACTGAAAATAGAGAACTTGTGAAGGAAGAGCCGATAAGGAGGTCTGTTTCTTTGGACTCATTGTCTGCTTCAATGATTCATCAAGCTATGGCTTCTGATTCTGCTAGGTTAGTAGTTGATGTAAGAGATTTGGATTCTGAAGAGAAGATTAAAAAGGGAGAAGGAAGGGGAAGGATTGAGCTGGTGAAGAGTAGTTCAATGAGGCATTTTCTGTACAAGGGGTCTGTTTCTATGAGGAGGTCATTTTCATCTAGTCGGAAGTTGTTCTTGTCTAGGCATTCTAGGAGCCAAAGTTCAATCCTTCGCATATGA 918 42.59 MPDSSFAPLCPDQLPPPPPLPLVLSSRPRQDFLDGDEGPILDHPIWYINTIGLQQSAIDTISMLKYKKGEGLIDGTDCSICLGEFQEEESLRLLPKCSHAFHLPCIDTWLRSHKNCPLCRAPIFANNTGPHLDGSRSRDETRIEILQGSNGISDQGNNRIDSNVDVVDNMLQSDNGRDEDSWFDEIPRWNMGNFQRKVLSDLTENRELVKEEPIRRSVSLDSLSASMIHQAMASDSARLVVDVRDLDSEEKIKKGEGRGRIELVKSSSMRHFLYKGSVSMRRSFSSSRKLFLSRHSRSQSSILRI 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10825853 10827464 - Conep09aG0150400.1 Cone9ag1461 445624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1461 305 Pfam Ring finger domain 77 120 IPR001841 -
Cone9ag1461 305 PANTHER RING-H2 FINGER PROTEIN ATL16 43 285 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cone9ag1461 305 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Cone9ag1461 305 CDD RING-H2_EL5-like 77 120 - -
Cone9ag1461 305 MobiDBLite consensus disorder prediction 9 24 - -
Cone9ag1461 305 FunFam RING-H2 finger protein ATL54 53 126 - -
Cone9ag1461 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 128 IPR013083 -
Cone9ag1461 305 SMART ring_2 78 119 IPR001841 -
Cone9ag1461 305 SUPERFAMILY RING/U-box 72 126 - -
Cone9ag1461 305 MobiDBLite consensus disorder prediction 1 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1461 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1317 Cone-Chr4:10822446 Cone9ag1461 Cone-Chr9:10825853 2.25E-43 dispersed
Cone6ag1544 Cone-Chr6:12131719 Cone9ag1461 Cone-Chr9:10825853 2.02E-168 dispersed
Cone7ag0039 Cone-Chr7:168055 Cone9ag1461 Cone-Chr9:10825853 1.74E-15 dispersed
Cone7ag0316 Cone-Chr7:1371004 Cone9ag1461 Cone-Chr9:10825853 8.52E-19 dispersed
Cone7ag0422 Cone-Chr7:1873731 Cone9ag1461 Cone-Chr9:10825853 3.21E-32 dispersed
Cone9ag1459 Cone-Chr9:10819887 Cone9ag1461 Cone-Chr9:10825853 1.13E-17 proximal
Cone12ag0985 Cone-Chr12:8436042 Cone9ag1461 Cone-Chr9:10825853 1.61E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013770 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 0 2 1 0 24