Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1475 ATGTCAAACCACGGAGAATTCTCCCGGCCGGATCCAATCGGAAACTGCGACCCTCGCGTCCCCCTACAGAACCTCTCTACGCTCAGCGTACGAATGGATTCAGTGCAAACCTTCCTATCCGACGCACTTAACAGGAACGTTGTGATCAGCGCTGAGCAGATGAACTTGGTGTCATCTGAGATCTCCGCTGCTATACACCAGATCACTGTAAACGGTGCAGCTCTTCTCTCATGCTCCCAGAGCCGGATTTATGAAGGATCCACCTCCCTGCTCACCGGAAAAACATCAAATCCGCCAGATCTGAAAGCTCCGATGAATCAATCGGTTCCTGCAAAAGGTAAAGTGTTTGTATTTCCTGAGCTGAAAGTTGGGGATATGGATGAAGATGTGAAAACAGAGACTGAAGATTTCAATCGTGATAGTGAAATCGTGGAGCTAGATGCCATGGAATTGCTCGCCGAGTATGTTCATTTCTGCGAGATTTGCGGCAAGGGATTCAAGCGTGACGCCAATTTACGGATGCATATGCGCGCGCATGGAAATCAATTCAAAATGCCAGAGGCTTTAGCGAAGCCATTGGATAAGATTACGGACTCTAGGGCGCGATCAGGAATAACGAAATTCTCGTGTCCGTTTGAAGGATGTAATCGGAGCAAAACGCACAAGAAATTCAGGCCGTTGAAATCGGTGATATGCTTGAAGAATCACTTCAAGCGAAGCCACTGCCCGAAGATGTATTCCTGCGATCGGTGTAACAAGAAGAGTTTCTCCGTCTTGGTCGATCTGAAAAGCCACATGAAACATTGCGGCGAGTCCAGGTGGCGGTGTTCTTGTGGGACCACGTTTTCTCGCAAGGACAAGCTGTTTGGACACATGGCGTTGTTTGAGGGGCACATGCCGGCGGTTGGAGATGAGGAGGAGAAGGTAACGAGCTCTTCTACGGCGGCCGCAACGGCGGAGGATGTGAAAGAGGATGAGAAACTGAAATCCACTTCCATGAACTCGAACTGGTCGGATGATGGATTGCTTGAGGGATTGTTAGACACGTTCAGTTCGAGTAATAGTTATTGCTTACAAGATCTATTAGCGTTTCCAAACGGCGTTTTGTGA 1110 48.65 MSNHGEFSRPDPIGNCDPRVPLQNLSTLSVRMDSVQTFLSDALNRNVVISAEQMNLVSSEISAAIHQITVNGAALLSCSQSRIYEGSTSLLTGKTSNPPDLKAPMNQSVPAKGKVFVFPELKVGDMDEDVKTETEDFNRDSEIVELDAMELLAEYVHFCEICGKGFKRDANLRMHMRAHGNQFKMPEALAKPLDKITDSRARSGITKFSCPFEGCNRSKTHKKFRPLKSVICLKNHFKRSHCPKMYSCDRCNKKSFSVLVDLKSHMKHCGESRWRCSCGTTFSRKDKLFGHMALFEGHMPAVGDEEEKVTSSSTAAATAEDVKEDEKLKSTSMNSNWSDDGLLEGLLDTFSSSNSYCLQDLLAFPNGVL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10898256 10899648 - Conep09aG0152000.1 Cone9ag1475 445638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1475 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Cone9ag1475 369 SMART c2h2final6 157 179 IPR013087 -
Cone9ag1475 369 SMART c2h2final6 274 298 IPR013087 -
Cone9ag1475 369 SMART c2h2final6 208 241 IPR013087 -
Cone9ag1475 369 SMART c2h2final6 246 268 IPR013087 -
Cone9ag1475 369 Gene3D Classic Zinc Finger 200 296 - -
Cone9ag1475 369 MobiDBLite consensus disorder prediction 304 333 - -
Cone9ag1475 369 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Cone9ag1475 369 Pfam Zinc finger, C2H2 type 157 179 IPR013087 -
Cone9ag1475 369 Gene3D Classic Zinc Finger 153 181 - -
Cone9ag1475 369 FunFam Zinc finger 45-like 156 180 - -
Cone9ag1475 369 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 15 332 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Cone9ag1475 369 SUPERFAMILY beta-beta-alpha zinc fingers 154 180 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1226 Cone-Chr4:10224325 Cone9ag1475 Cone-Chr9:10898256 1.13E-75 dispersed
Cone7ag0909 Cone-Chr7:7133436 Cone9ag1475 Cone-Chr9:10898256 7.23E-76 dispersed
Cone6ag1558 Cone-Chr6:12203413 Cone9ag1475 Cone-Chr9:10898256 6.99E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46909 PF07928 Vps54 2.20E-44 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1475 - - - 0.0