Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1493 ATGACAGACCCAGTGTTTTTATCAGATCCCTTTAGTGAAGAACTCATGAAAGCACTCGAACCTTTTATGAAGAGTGCTTCATCTTCTACCCCTTCTTCGCCATCTTCACTTCCCTCTGTTTTTTCTTCTCATCCCAATTTACACCAAAACGTCCTCACCCAATTGAGTACCCCTATGTATACAGAGGGGTTCTCATTTCAAGACCAAACACGCCCATTAGGCCTTAACCAACTCACCACCTCTCAAATTCTCCAAATCCAATCCCAAATCAACCTCCAACAGGAGCAAATGGCAGGAGCCATGGCTCAACCTTCATCCCGAAAACAGAACCAATTAACCAACTTCCTTAGCCCCAAATCCATCCCGATGAAGCAAGTGGGCTCTCCTCCTCAAAAGTCCAATAAGCTCTACAGAGGTGTGAGACAGAGGCATTGGGGCAAATGGGTCGCCGAAATCCGGCTCCCTAAGAACCGAACCCGGCTCTGGCTCGGTACATTTGATACGGCCGAAGAAGCTGCTTTGGCTTATGATAGTGCTGCTTATAAGCTCAGGGGTGATTTTGCAAGGCTCAATTTACCTCATTTAAAGCACCAGTTTTCAAATTACAAGCCTCTCCCTTCCTCTGTTGATGCCAAGCTTGAAGCAATTTGCCAGAGCTTGGGTGATTTGCCGAAACAGGGGAAAACAGAGAAGCTCTGTTTGAAACAGAGTGTTATGGATTATTTTTCTTCCAATTCAAACGCAATTTTCGATGATTCTTCGGAATCTGATTTCAAAAGTGAATTGGAATGTTTCGGTTCAGAGGACGAAAAGGCTGAGAATTCAAATTCCTGGTGTTCGGCTTCGGCTTCTCCTCAATCCGAGATCACATTCTTGGATTTTAGTGAAGAAACAGAGGCTCTTGGATTGGAGAAGTACCCATCGGTGGAGATTGATTGGTCTGCTATCTGA 951 45.01 MTDPVFLSDPFSEELMKALEPFMKSASSSTPSSPSSLPSVFSSHPNLHQNVLTQLSTPMYTEGFSFQDQTRPLGLNQLTTSQILQIQSQINLQQEQMAGAMAQPSSRKQNQLTNFLSPKSIPMKQVGSPPQKSNKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDSAAYKLRGDFARLNLPHLKHQFSNYKPLPSSVDAKLEAICQSLGDLPKQGKTEKLCLKQSVMDYFSSNSNAIFDDSSESDFKSELECFGSEDEKAENSNSWCSASASPQSEITFLDFSEETEALGLEKYPSVEIDWSAI 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10975569 10977252 - Conep09aG0153800.1 Cone9ag1493 445656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1493 316 CDD AP2 135 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1493 316 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1493 316 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1493 316 MobiDBLite consensus disorder prediction 23 42 - -
Cone9ag1493 316 Gene3D AP2/ERF domain 136 194 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1493 316 SMART rav1_2 136 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1493 316 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677(InterPro)
Cone9ag1493 316 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1493 316 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 316 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone9ag1493 316 FunFam Ethylene-responsive transcription factor 2 135 194 - -
Cone9ag1493 316 Pfam AP2 domain 136 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1493 316 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1447 Cone-Chr12:10443107 Cone9ag1493 Cone-Chr9:10975569 4.83E-30 dispersed
Cone7ag1858 Cone-Chr7:12016591 Cone9ag1493 Cone-Chr9:10975569 2.51E-22 dispersed
Cone8ag1497 Cone-Chr8:11365914 Cone9ag1493 Cone-Chr9:10975569 5.21E-30 dispersed
Cone9ag0847 Cone-Chr9:4140632 Cone9ag1493 Cone-Chr9:10975569 3.65E-36 dispersed
Cone9ag1493 Cone-Chr9:10975569 Cone9ag1320 Cone-Chr9:9921631 1.25E-21 dispersed
Cone17ag1230 Cone-Chr17:8918498 Cone9ag1493 Cone-Chr9:10975569 1.03E-58 wgd
Cone20ag0497 Cone-Chr20:2660368 Cone9ag1493 Cone-Chr9:10975569 2.05E-53 wgd
Cone4ag1350 Cone-Chr4:11006044 Cone9ag1493 Cone-Chr9:10975569 9.59E-70 wgd
Cone6ag1574 Cone-Chr6:12274587 Cone9ag1493 Cone-Chr9:10975569 5.12E-185 wgd
Cone7ag1581 Cone-Chr7:10838004 Cone9ag1493 Cone-Chr9:10975569 3.32E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46911 PF02992 Transposase_21 2.50E-23 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1493 K09286 - csv:101211347 287.345