Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag1513 | ATGGTGGATCTTTCCGACTCAGCGCCGCTCGTCACTCCGGTTCCGGTCATCGAAGCTCGTGAGATCGATCTCGAAGCTGGCCCTGGAGAGCAAATTCAATGTAGAATTTGCCTCGAGACAGATGGTAGGGATTTTATAGCACCCTGCAAGTGCAAAGGAACATCAAAGTATGTTCATCGGGAATGTTTGGATCATTGGCGAGCAGTGAGGGAAGGGTTTGCATTTGCTTATTGTACCACCTGCAAGGCCCCTTACTATTTGAGAGTTCATGCTGTTGCTGATAGGAAATGGCGAACTCTGAAGTTTCGATTTTTTGTGACTAGAGACATTATATTCATATTTCTGATGGTTCAGATGGTAATCACTACACTCGCATATTTGGTGTATCTAATAGATGGTTACAAAGAGTACTGGCTTCGCCATGCATGGAGTTTTGATAGTGAACTTAGTTTCTACTACATTTGTGGAGCGCTATTGTTTTTTGCTTTGCTTGGGCTATCCGGGTGCTTCATCACATGTTATGATAGAAGAGTTAGAAATGATTTGGCTCAGCCTTGTCGAGAATTATGTCTTTGTTGCTGCCACCCTGGAGTATGCGCAGACTGTCATTTACCCGGCACTTTATGTATGTGGACTGACTGTACCACATGCTTTGAGAGCTGTGCAAGTATGGGAACTGAATGTGGATGCGTAGGAGGAGCTGGTGAAGCTGGGCTGCCCTTGTTATTTATAATGGCTTTGATTGTGCTCGGCCTTTTTACAGTGATCGGAATATTCTATAGTGTCTTGGTCGCTACTATGGTCGGCCAAAGGATCTGGCAACGGCACTATCACATTCTTGCCAAAAGGATGCTAACAAAAGAATATGTGGTTGAAGATGTAGATGGTGAGATGGCAGGATCTGATTGGTTACCTCCTCCATTGCCACCCGAGCATGTTCAACAGCTGAAAAACCTCGGCCTTCTATGA | 969 | 44.99 | MVDLSDSAPLVTPVPVIEAREIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAYCTTCKAPYYLRVHAVADRKWRTLKFRFFVTRDIIFIFLMVQMVITTLAYLVYLIDGYKEYWLRHAWSFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGVCADCHLPGTLCMWTDCTTCFESCASMGTECGCVGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMAGSDWLPPPLPPEHVQQLKNLGLL | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 11069236 | 11072171 | - | Conep09aG0155800.1 | Cone9ag1513 | 445676 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag1513 | 322 | Pfam | RING-variant domain | 34 | 81 | IPR011016 | GO:0008270(InterPro) | |
| Cone9ag1513 | 322 | SUPERFAMILY | RING/U-box | 30 | 86 | - | - | |
| Cone9ag1513 | 322 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 26 | 88 | IPR011016 | GO:0008270(InterPro) | |
| Cone9ag1513 | 322 | CDD | RING_CH-C4HC3_MARCH | 34 | 82 | - | - | |
| Cone9ag1513 | 322 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 20 | 321 | - | - | |
| Cone9ag1513 | 322 | SMART | ringv_2 | 33 | 82 | IPR011016 | GO:0008270(InterPro) | |
| Cone9ag1513 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 94 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone7ag0656 | Cone-Chr7:3420822 | Cone9ag1513 | Cone-Chr9:11069236 | 4.11E-63 | dispersed | |
| Cone7ag0811 | Cone-Chr7:6023430 | Cone9ag1513 | Cone-Chr9:11069236 | 9.89E-12 | dispersed | |
| Cone6ag1592 | Cone-Chr6:12370439 | Cone9ag1513 | Cone-Chr9:11069236 | 4.77E-236 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag1513 | - | - | - | 0.0 |