Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1529 ATGCATGATACCAAACCCCACGTGGCTCTTCTATCCAGCCCAGGAATGGGCCACGTTACTCCTGTCTTAGAACTCGCGAAACGCCTCGTCAATCACCATAACCTCACCGCCACCCTCTTCGTCGTCTCCGCAGGCTCCGACTCCTCATCAGCCGAACACCACCTTCTCAAAAGCACCTCCTCCACCACCCCAGATTCCATCACCATCGTCTTCCTCCCACCCGTTGATATCTCCCACATAATCGACCTTACCACCGCTTCAGTCGTCACGCGTATCGTAGTCACCATGTACGCGTCCATACCCAATCTCCGCTCCCAACTAATCTCCATGCCTGTCCGACCGGTCGCCATCATCGTTGACCTTTTTGGAACCGGATCCATAGCTATGGCCCGCGAGCTCGGGATGCTGACTTATTCCTTCGTGACGTCGAACGCTTGGTTTCTCGCCGTAACGGTTCATTGCCCCAAACTTGAACCGGACGACGTGGTAAACCATGTGTTCAAAGAGGAGCCGCTGAAAATCCCGGGTTGTAGATCGATCAAATACGAAGACACGCTTGAAGCTTTCGAAGTCAAAGATGATCAGTATTATAAAGATTACGCGCGCGTAGGGACTGAGATCGCAACGGCTGATGGGATTTTAGTAAACACGTGGCAAGATCTGGAACCTACGTCACTGAAAGCGTTGAAAAAGATCGTTGACGTGCCGGTATTTCCGATTGGACCGCTGACCCGGTCCGTTGAGATCGGGTTGGAGAGTGAGGTTTTGGACTGGCTTGATTTACAGCCTAAAGAGTCTGTGATTTACGTTTCGTTTGGGAGTGGTGGAACCCTCTCGGCGGAGCAAATGGCTGAGCTGGCATGGGGGTTGGACCTAAGCGGCCAGAGATTTATTTGGGTGGTACGCCCTCCAACTGAAAATGACTCATCCGGGTCATTTTTCACCGTTGGAAACCGACTTGAAGGAGCACCGGACTACTTACCCGACGGCTTTTTAACCCGGACTAAGAACTTCGGCTTGGTGGTGCAAAATTGGGCCCCGCAAAACGAGATTCTGACCCATCCCTCAGTGGGCGGGTTTTTGAGCCACTGTGGTTGGAATTCAACGTTAGAGAGTATAGTCAACGGAGTTCCGATGATCGGGTGGCCGCTTTATGCGGAGCAGAAGATGAACGCGTGCATGTTGTCGGAGGAGTTAGGGGTGGCGTTGAGGTTGCGGGCGGAGCCGGCGAGGGGGGTGGTGGTGAGGGAGAATATAGAAAAGGCGGTGAGGAATATTGTAGAAGAAGGGAAGGAAATGAGGAGTAAGGTCAAGGAGTTGAAACGGAGAGGTGAAAAGGCAGTAAGTAAAGCCGGTTCGTCGTTTAATTCGTTGGCCGAGGTGTCTAGAGAGTGTGAGATGTGTGTTCAAAGTGCGCGGTTAAAGTCACTTGGCGCTTAG 1440 52.36 MHDTKPHVALLSSPGMGHVTPVLELAKRLVNHHNLTATLFVVSAGSDSSSAEHHLLKSTSSTTPDSITIVFLPPVDISHIIDLTTASVVTRIVVTMYASIPNLRSQLISMPVRPVAIIVDLFGTGSIAMARELGMLTYSFVTSNAWFLAVTVHCPKLEPDDVVNHVFKEEPLKIPGCRSIKYEDTLEAFEVKDDQYYKDYARVGTEIATADGILVNTWQDLEPTSLKALKKIVDVPVFPIGPLTRSVEIGLESEVLDWLDLQPKESVIYVSFGSGGTLSAEQMAELAWGLDLSGQRFIWVVRPPTENDSSGSFFTVGNRLEGAPDYLPDGFLTRTKNFGLVVQNWAPQNEILTHPSVGGFLSHCGWNSTLESIVNGVPMIGWPLYAEQKMNACMLSEELGVALRLRAEPARGVVVRENIEKAVRNIVEEGKEMRSKVKELKRRGEKAVSKAGSSFNSLAEVSRECEMCVQSARLKSLGA 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11142637 11144076 + Conep09aG0157500.1 Cone9ag1529 445692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1529 479 ProSitePatterns UDP-glycosyltransferases signature. 345 388 IPR035595 -
Cone9ag1529 479 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 460 - -
Cone9ag1529 479 FunFam Glycosyltransferase 253 449 - -
Cone9ag1529 479 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 260 428 IPR002213 GO:0008194(InterPro)
Cone9ag1529 479 Gene3D Glycogen Phosphorylase B; 7 454 - -
Cone9ag1529 479 CDD GT1_Gtf-like 6 455 IPR002213 GO:0008194(InterPro)
Cone9ag1529 479 Coils Coil 423 443 - -
Cone9ag1529 479 Gene3D Glycogen Phosphorylase B; 253 449 - -
Cone9ag1529 479 PANTHER UDP-GLYCOSYLTRANSFERASE 72E1 3 470 - GO:0047209(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1529 K12356 - - cit:102606694 521.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1605 Cone-Chr6:12423254 Cone9ag1529 Cone-Chr9:11142637 1.53E-294 dispersed
Cone9ag0249 Cone-Chr9:1057370 Cone9ag1529 Cone-Chr9:11142637 1.20E-67 dispersed
Cone9ag0250 Cone-Chr9:1059199 Cone9ag1529 Cone-Chr9:11142637 5.27E-62 dispersed
Cone9ag0517 Cone-Chr9:2472760 Cone9ag1529 Cone-Chr9:11142637 7.52E-53 dispersed
Cone9ag1529 Cone-Chr9:11142637 Cone9ag0286 Cone-Chr9:1224306 5.86E-47 dispersed
Cone9ag1528 Cone-Chr9:11139609 Cone9ag1529 Cone-Chr9:11142637 7.00E-07 tandem
Cone4ag1894 Cone-Chr4:13502004 Cone9ag1529 Cone-Chr9:11142637 1.97E-109 wgd
Cone7ag1806 Cone-Chr7:11810173 Cone9ag1529 Cone-Chr9:11142637 1.56E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g923 Blo04g00928 . . Bda10g00120 Bpe15g00439 . . Bma15g01008 . . . Cma07g00506 . . . Cpe19g00794 Cpe10g00590 Bhi03g01262 . . . . . . Cla01g01883 . . . . . . . Cone12ag0758 Cone6ag1605 Cone9ag1529 Lsi01g00703 . . Cme08g00822 . . . . Bpe10g00105 . . . . Cmo03g00805 Cmo07g00505 . . . . . . . . . . . . . . . . . . . . Lsi07g00267 Csa06g03213 Chy02g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010742 0 2 0 0 0 1 0 1 1 1 1 1 1 1 1 2 1 2 2 1 1 2 1 2 2 1 1 2 1 0 32