Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1531 ATGAACCAAGAAGTTGATGACCAAATGTCATTAGTCTCTCAGCTTTACCCTGTGGTGTACACTCAATTGGTACCCCAACAAGGAGTGTTGAAACCGAGAAGGCGGAGAAGGAAGAGCAAAGCAATGTCCAGCTCGGCCGGAGAAAACGGTATAGGAGGATTAATGAGGAAGAGGAAGCTTAGCGCCGAGCAAGTTTATCTTCTCGAGAAGAATTTCGGCAACGAGCACAAACTGGAGTCCGAAAGAAAAGACCGTTTGGCGTCCGAGCTCGGCCTCGACCCTCGTCAGGTTACGGTTTGGTTTCAAAACCGTAGAGCTCGTTGGAAGAACAAGAAGTTGGAAGAAGAGTACTCCACCTTAAAGAAATCTCACGATTCGATCGTTGTTGAAAAATCCCGCATGGAGTCTGAGGCGTTGAAGCTAAAGGAGAAACTATTAGAAGTGGAGAAGGAGATACAACGTCTATCGGAACTGGCGTTTGGTGGAGCGTCGAGTGATAGTACTCCAAGCTCGTCGCTTTCGGTAGAAGCGGCGTTTCTAGTCGAGTTTGGCATCGAAGGAGGGGCTACTACTACAACTGCTACTGCCGGTACTACTAACTATGCGGATGCTTTCTACATGGAAGACACCACTTATTACAATATTCATGGATTGGAGTGGGTTAATCCTTACATGTTAATAGATCAATAA 690 46.52 MNQEVDDQMSLVSQLYPVVYTQLVPQQGVLKPRRRRRKSKAMSSSAGENGIGGLMRKRKLSAEQVYLLEKNFGNEHKLESERKDRLASELGLDPRQVTVWFQNRRARWKNKKLEEEYSTLKKSHDSIVVEKSRMESEALKLKEKLLEVEKEIQRLSELAFGGASSDSTPSSSLSVEAAFLVEFGIEGGATTTTATAGTTNYADAFYMEDTTYYNIHGLEWVNPYMLIDQ 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11160124 11161379 + Conep09aG0157700.1 Cone9ag1531 445694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1531 229 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677(InterPro)
Cone9ag1531 229 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677(InterPro)
Cone9ag1531 229 ProSiteProfiles 'Homeobox' domain profile. 56 111 IPR001356 GO:0003677(InterPro)
Cone9ag1531 229 CDD homeodomain 56 112 IPR001356 GO:0003677(InterPro)
Cone9ag1531 229 MobiDBLite consensus disorder prediction 29 54 - -
Cone9ag1531 229 SUPERFAMILY Homeodomain-like 57 120 IPR009057 -
Cone9ag1531 229 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Cone9ag1531 229 Coils Coil 103 123 - -
Cone9ag1531 229 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone9ag1531 229 Gene3D - 52 119 - -
Cone9ag1531 229 Pfam Homeodomain 58 110 IPR001356 GO:0003677(InterPro)
Cone9ag1531 229 SMART HOX_1 54 115 IPR001356 GO:0003677(InterPro)
Cone9ag1531 229 Coils Coil 131 158 - -
Cone9ag1531 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 165 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0756 Cone-Chr12:6991505 Cone9ag1531 Cone-Chr9:11160124 1.74E-58 dispersed
Cone14ag1050 Cone-Chr14:8849253 Cone9ag1531 Cone-Chr9:11160124 7.85E-17 dispersed
Cone9ag1406 Cone-Chr9:10475756 Cone9ag1531 Cone-Chr9:11160124 1.48E-10 dispersed
Cone9ag1462 Cone-Chr9:10830702 Cone9ag1531 Cone-Chr9:11160124 1.50E-19 dispersed
Cone8ag0797 Cone-Chr8:8001313 Cone9ag1531 Cone-Chr9:11160124 3.52E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46912 PF13837 Myb_DNA-bind_4 1.10E-18 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1531 K09338 - mdm:103401226 216.853