Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1533 ATGGGGACAGGAGAAGAGGCTACTCCTCCTAAGACTACCAGACCAGCTTCTTCATCTCAGGAAATTCCAACAACACCTTCATATCCCGATTGGTCCAGCTCGATGCAGGCTTATTACGGAGCCGGCGCGACGCCACCTCCGTTTTTTGCATCAACTCCCAGTCCCCACCCCTATATGTGGGGAGCCCAGCATCCTTTGATTCCACCATATGGGACCCCTGTCCCATATCCATCTATATATCCTCCAGGCGGAGTTTATGCTCATCCTAATATGACCACGGTACCACTCTCAGCTCAGACTACCACGGAAACAGAAGGGAAGGTGCCTGACGGAAAGGACAAGGCTTCTGGGAAAAAATCAAAGGGTGGTCAAGGAAATAGTGTGAAGGTGGCACCTTCAGGTTCTGGAAATGATGGTCAAAGTACTGAAAGTGCTACTGAGGGTTCTTCTGATGGTAGCGATGAGAATCTAAACCAACAGGAATTTTCTGCAAGTAAGAGGGGAAGCTTCGACCAGATGCTTGCAGATGCCAATGCACAGAATACCAGTGCTGGGCCAAACCTTCAACCTTCAGTAATTGGAAAACCCATAGTCCCTATGCCCCCAACCAATCTGAATATAGGAATGGACTTATGGAACTCGGGCGCTGCTGGTTCTGTGCCTGCAAAAATGAGGCCCAATCAAACAGGTGGCGCCCTTGTCCCGGCTCCTCCCGAGCCATGGATTCAAAAGGACGAACGGGAACTGAAAAGACAGAAGAGGAAGCAATCTAATAGGGAGTCGGCCCGTAGGTCACGACTGCGTAAGCAGGCGGAATGTGAAGAGTTACAAGCAAGGGTGGAGGCATTGGGCAATGAGAATAGAACTCTTAGAGATGAGTTGCAGGGTCTTTCCGATGAATGTGAGAAGCTTGTATCGGAAAATAGTTCCCTCAAGGAAGAATTGACGCAGTTGTGTGGACTGGAAGCGCTAAGTAACCTTGAAGACGGAAATCCCAAATCAGCTCTTGAATCTCATGGTGGTGAAGGTAAATAG 1035 49.28 MGTGEEATPPKTTRPASSSQEIPTTPSYPDWSSSMQAYYGAGATPPPFFASTPSPHPYMWGAQHPLIPPYGTPVPYPSIYPPGGVYAHPNMTTVPLSAQTTTETEGKVPDGKDKASGKKSKGGQGNSVKVAPSGSGNDGQSTESATEGSSDGSDENLNQQEFSASKRGSFDQMLADANAQNTSAGPNLQPSVIGKPIVPMPPTNLNIGMDLWNSGAAGSVPAKMRPNQTGGALVPAPPEPWIQKDERELKRQKRKQSNRESARRSRLRKQAECEELQARVEALGNENRTLRDELQGLSDECEKLVSENSSLKEELTQLCGLEALSNLEDGNPKSALESHGGEGK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11169867 11173301 + Conep09aG0157900.1 Cone9ag1533 445696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1533 344 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1533 344 SMART brlzneu 246 310 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1533 344 MobiDBLite consensus disorder prediction 1 58 - -
Cone9ag1533 344 Gene3D - 249 304 - -
Cone9ag1533 344 SUPERFAMILY Leucine zipper domain 249 305 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1533 344 Coils Coil 259 314 - -
Cone9ag1533 344 FunFam BZIP transcription factor 248 299 - -
Cone9ag1533 344 PANTHER G-BOX-BINDING FACTOR 3-RELATED 15 325 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cone9ag1533 344 MobiDBLite consensus disorder prediction 241 255 - -
Cone9ag1533 344 MobiDBLite consensus disorder prediction 10 39 - -
Cone9ag1533 344 MobiDBLite consensus disorder prediction 215 271 - -
Cone9ag1533 344 MobiDBLite consensus disorder prediction 120 167 - -
Cone9ag1533 344 MobiDBLite consensus disorder prediction 323 344 - -
Cone9ag1533 344 Pfam bZIP transcription factor 246 308 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1533 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 311 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1533 344 Pfam G-box binding protein MFMR 1 91 IPR012900 -
Cone9ag1533 344 CDD bZIP_plant_GBF1 251 301 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1533 344 MobiDBLite consensus disorder prediction 99 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0496 Cone-Chr8:3532227 Cone9ag1533 Cone-Chr9:11169867 2.47E-41 dispersed
Cone8ag0602 Cone-Chr8:5238875 Cone9ag1533 Cone-Chr9:11169867 6.83E-41 dispersed
Cone6ag1607 Cone-Chr6:12444611 Cone9ag1533 Cone-Chr9:11169867 1.86E-199 wgd
Cone8ag1185 Cone-Chr8:10158430 Cone9ag1533 Cone-Chr9:11169867 4.53E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46913 PF00168 C2 2.50E-24 CL0154 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1533 K09060 - csv:101217128 446.432