Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1538 ATGCCGACAGATTTAGATAACTCCTCCACCGCTTCGGGGGAAGCTAGCGTGTCTTCATCTGGAAATCAGCCGCCGCCGCCGCCGCCGCCGAAGTCTTCCGGAAAGAAGAAGCGGAACCTCCCCGGAATGCCAGATCCGGATGCAGAGGTGATAGCACTGTCGCCAAAAACTCTATTAGCAACGAATCGATTCGTGTGCGAAATCTGCAGCAAAGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATCGAAGAGGTCATAATCTGCCATGGAAGCTTAGGCAGAGAACGAGCAAGGAGGTGAAGAAGAGGGTCTACGTCTGCCCTGAACCGTCCTGCGTTCACCATGATCCGTCTCGAGCTCTTGGCGATCTAACGGGAATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAGTGCTCTAAGAAATACGCCGTTCAGTCCGACTGGAAAGCCCATTCTAAGATTTGCGGCACTAGAGAGTATAAATGCGACTGCGGAACGCTATTTTCCAGGAGGGATAGTTTCATAACGCATAGGGCGTTCTGTGACGCGTTAGCTGAGGAGAGTGCAAGGGCTCAAACGCAACCGGAAACAGTGGAGGCGGTGGACCCGAATACAGAATCCGACCCGAATTTCGTGCCCGCTAGCTCCTCTTCTTCGCCTCATCCAGCTCATTCAAGTCAGCAACCGCCAGCTACTACATCTCCGAAGTCAACTGCTCTCATCGCTTCAGTTTTATCCATTCGGAGTCAAGAAACCCAACAACTTATTGAAGAAGCACCAACAGCTACTACAACAACAGGCGTTAATGGGACCTCTACCACTAGACCGAGTTGCAATAGCAGCACGAGTAGCAGTGTATTTGCAAGTTTATTTTCATCCTCAACTGCCTCACTATCCTTACAACAACCATCCCAATCCCCTGCATTTACGGACCTAATACGAGCCATGTCCCATTCAGATCGTTTGACCGACCTCACCCCTCCATCTTCAACCGCTGAAGCCATCTCTCTCTGCCTCTCGACCAATCACCCCTCGTCCATATTTGGGCCTGCCAGCCCAGAGCGGAGGCAATATGCACCACCAACTCAACAACAGCCAGCCATTTCCGCCACAGCATTGCTCCAGAAAGCCGCCCAGATGGGAGCTGTGGCAACTAATGCAACATTGCTTCGTGGGTTGGGGGTAGTATCGTCATCTTCTTCGTCAGGGCAACAACAAGAGAATACTATGCAATGGAGTCAACGACAGGTGGAACAGGATGATACTCCGGTTCCACCTGGCCTTGTGCTCGGGCTTTGTGGAGAAGGGTCCACTTCTGGGTTGAAAGAATTGATGATGGGAAGTCATTCGATGTTCGGTCCGAAGCAAACTACTCTTGATTTTCTCGGATTGGGAATGGCAGCAGGGGGCAGCCCTAACGGCAGCTTGTCTGCCTTAATTGCGTCTATTGGTGGTGGTTTGGATGTTGCTGCAGCGGCTGCATCCTTCGGAGGGGGTGACTTCTCGGGCAAAGATATAGGTAGGAACTCCTGA 1554 51.42 MPTDLDNSSTASGEASVSSSGNQPPPPPPPKSSGKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAQTQPETVEAVDPNTESDPNFVPASSSSSPHPAHSSQQPPATTSPKSTALIASVLSIRSQETQQLIEEAPTATTTTGVNGTSTTRPSCNSSTSSSVFASLFSSSTASLSLQQPSQSPAFTDLIRAMSHSDRLTDLTPPSSTAEAISLCLSTNHPSSIFGPASPERRQYAPPTQQQPAISATALLQKAAQMGAVATNATLLRGLGVVSSSSSSGQQQENTMQWSQRQVEQDDTPVPPGLVLGLCGEGSTSGLKELMMGSHSMFGPKQTTLDFLGLGMAAGGSPNGSLSALIASIGGGLDVAAAAASFGGGDFSGKDIGRNS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11184713 11187633 - Conep09aG0158400.1 Cone9ag1538 445701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1538 517 SMART c2h2final6 105 135 IPR013087 -
Cone9ag1538 517 SMART c2h2final6 64 86 IPR013087 -
Cone9ag1538 517 SMART c2h2final6 140 160 IPR013087 -
Cone9ag1538 517 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Cone9ag1538 517 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cone9ag1538 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 474 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone9ag1538 517 MobiDBLite consensus disorder prediction 264 287 - -
Cone9ag1538 517 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
Cone9ag1538 517 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 204 - -
Cone9ag1538 517 Gene3D Classic Zinc Finger 118 198 - -
Cone9ag1538 517 MobiDBLite consensus disorder prediction 1 47 - -
Cone9ag1538 517 MobiDBLite consensus disorder prediction 1 20 - -
Cone9ag1538 517 MobiDBLite consensus disorder prediction 198 244 - -
Cone9ag1538 517 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Cone9ag1538 517 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Cone9ag1538 517 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Cone9ag1538 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cone9ag1538 517 FunFam protein indeterminate-domain 12-like 43 111 - -
Cone9ag1538 517 Gene3D Classic Zinc Finger 44 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0858 Cone-Chr11:7118979 Cone9ag1538 Cone-Chr9:11184713 3.72E-89 dispersed
Cone4ag0926 Cone-Chr4:7625461 Cone9ag1538 Cone-Chr9:11184713 5.08E-98 dispersed
Cone7ag1220 Cone-Chr7:9051517 Cone9ag1538 Cone-Chr9:11184713 1.72E-98 dispersed
Cone4ag1898 Cone-Chr4:13515979 Cone9ag1538 Cone-Chr9:11184713 6.39E-126 wgd
Cone6ag1610 Cone-Chr6:12459846 Cone9ag1538 Cone-Chr9:11184713 1.69E-272 wgd
Cone7ag1811 Cone-Chr7:11826012 Cone9ag1538 Cone-Chr9:11184713 8.04E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46914 PF16016 VASt 4.40E-28 CL0209 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1538 K25869 - vvi:100263342 618.231