Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag1538 | ATGCCGACAGATTTAGATAACTCCTCCACCGCTTCGGGGGAAGCTAGCGTGTCTTCATCTGGAAATCAGCCGCCGCCGCCGCCGCCGCCGAAGTCTTCCGGAAAGAAGAAGCGGAACCTCCCCGGAATGCCAGATCCGGATGCAGAGGTGATAGCACTGTCGCCAAAAACTCTATTAGCAACGAATCGATTCGTGTGCGAAATCTGCAGCAAAGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATCGAAGAGGTCATAATCTGCCATGGAAGCTTAGGCAGAGAACGAGCAAGGAGGTGAAGAAGAGGGTCTACGTCTGCCCTGAACCGTCCTGCGTTCACCATGATCCGTCTCGAGCTCTTGGCGATCTAACGGGAATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAGTGCTCTAAGAAATACGCCGTTCAGTCCGACTGGAAAGCCCATTCTAAGATTTGCGGCACTAGAGAGTATAAATGCGACTGCGGAACGCTATTTTCCAGGAGGGATAGTTTCATAACGCATAGGGCGTTCTGTGACGCGTTAGCTGAGGAGAGTGCAAGGGCTCAAACGCAACCGGAAACAGTGGAGGCGGTGGACCCGAATACAGAATCCGACCCGAATTTCGTGCCCGCTAGCTCCTCTTCTTCGCCTCATCCAGCTCATTCAAGTCAGCAACCGCCAGCTACTACATCTCCGAAGTCAACTGCTCTCATCGCTTCAGTTTTATCCATTCGGAGTCAAGAAACCCAACAACTTATTGAAGAAGCACCAACAGCTACTACAACAACAGGCGTTAATGGGACCTCTACCACTAGACCGAGTTGCAATAGCAGCACGAGTAGCAGTGTATTTGCAAGTTTATTTTCATCCTCAACTGCCTCACTATCCTTACAACAACCATCCCAATCCCCTGCATTTACGGACCTAATACGAGCCATGTCCCATTCAGATCGTTTGACCGACCTCACCCCTCCATCTTCAACCGCTGAAGCCATCTCTCTCTGCCTCTCGACCAATCACCCCTCGTCCATATTTGGGCCTGCCAGCCCAGAGCGGAGGCAATATGCACCACCAACTCAACAACAGCCAGCCATTTCCGCCACAGCATTGCTCCAGAAAGCCGCCCAGATGGGAGCTGTGGCAACTAATGCAACATTGCTTCGTGGGTTGGGGGTAGTATCGTCATCTTCTTCGTCAGGGCAACAACAAGAGAATACTATGCAATGGAGTCAACGACAGGTGGAACAGGATGATACTCCGGTTCCACCTGGCCTTGTGCTCGGGCTTTGTGGAGAAGGGTCCACTTCTGGGTTGAAAGAATTGATGATGGGAAGTCATTCGATGTTCGGTCCGAAGCAAACTACTCTTGATTTTCTCGGATTGGGAATGGCAGCAGGGGGCAGCCCTAACGGCAGCTTGTCTGCCTTAATTGCGTCTATTGGTGGTGGTTTGGATGTTGCTGCAGCGGCTGCATCCTTCGGAGGGGGTGACTTCTCGGGCAAAGATATAGGTAGGAACTCCTGA | 1554 | 51.42 | MPTDLDNSSTASGEASVSSSGNQPPPPPPPKSSGKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAQTQPETVEAVDPNTESDPNFVPASSSSSPHPAHSSQQPPATTSPKSTALIASVLSIRSQETQQLIEEAPTATTTTGVNGTSTTRPSCNSSTSSSVFASLFSSSTASLSLQQPSQSPAFTDLIRAMSHSDRLTDLTPPSSTAEAISLCLSTNHPSSIFGPASPERRQYAPPTQQQPAISATALLQKAAQMGAVATNATLLRGLGVVSSSSSSGQQQENTMQWSQRQVEQDDTPVPPGLVLGLCGEGSTSGLKELMMGSHSMFGPKQTTLDFLGLGMAAGGSPNGSLSALIASIGGGLDVAAAAASFGGGDFSGKDIGRNS | 517 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 11184713 | 11187633 | - | Conep09aG0158400.1 | Cone9ag1538 | 445701 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag1538 | 517 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Cone9ag1538 | 517 | SMART | c2h2final6 | 64 | 86 | IPR013087 | - | |
Cone9ag1538 | 517 | SMART | c2h2final6 | 140 | 160 | IPR013087 | - | |
Cone9ag1538 | 517 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 139 | 163 | - | - | |
Cone9ag1538 | 517 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 66 | 86 | IPR013087 | - | |
Cone9ag1538 | 517 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 19 | 474 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cone9ag1538 | 517 | MobiDBLite | consensus disorder prediction | 264 | 287 | - | - | |
Cone9ag1538 | 517 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 101 | 135 | - | - | |
Cone9ag1538 | 517 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 166 | 204 | - | - | |
Cone9ag1538 | 517 | Gene3D | Classic Zinc Finger | 118 | 198 | - | - | |
Cone9ag1538 | 517 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Cone9ag1538 | 517 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cone9ag1538 | 517 | MobiDBLite | consensus disorder prediction | 198 | 244 | - | - | |
Cone9ag1538 | 517 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 118 | 197 | - | - | |
Cone9ag1538 | 517 | SUPERFAMILY | beta-beta-alpha zinc fingers | 63 | 160 | IPR036236 | - | |
Cone9ag1538 | 517 | Pfam | Zinc finger, C2H2 type | 64 | 86 | IPR013087 | - | |
Cone9ag1538 | 517 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 64 | 86 | IPR013087 | - | |
Cone9ag1538 | 517 | FunFam | protein indeterminate-domain 12-like | 43 | 111 | - | - | |
Cone9ag1538 | 517 | Gene3D | Classic Zinc Finger | 44 | 110 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0858 | Cone-Chr11:7118979 | Cone9ag1538 | Cone-Chr9:11184713 | 3.72E-89 | dispersed | |
Cone4ag0926 | Cone-Chr4:7625461 | Cone9ag1538 | Cone-Chr9:11184713 | 5.08E-98 | dispersed | |
Cone7ag1220 | Cone-Chr7:9051517 | Cone9ag1538 | Cone-Chr9:11184713 | 1.72E-98 | dispersed | |
Cone4ag1898 | Cone-Chr4:13515979 | Cone9ag1538 | Cone-Chr9:11184713 | 6.39E-126 | wgd | |
Cone6ag1610 | Cone-Chr6:12459846 | Cone9ag1538 | Cone-Chr9:11184713 | 1.69E-272 | wgd | |
Cone7ag1811 | Cone-Chr7:11826012 | Cone9ag1538 | Cone-Chr9:11184713 | 8.04E-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46914 | PF16016 | VASt | 4.40E-28 | CL0209 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag1538 | K25869 | - | vvi:100263342 | 618.231 |