Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1541 ATGTGGCGGTGTGTTTCTCGTGGTCTTCGCGCCTCTTTCTTAACATCTTCTTCTCCGTCGAAGAGATCCACTCCCGGCGACGTTTACAGATCTCACATTTCTAGATTTTTCTCCGTCGATTCGAATGCCGGTAGTCCCTCCTACACTGTTGTTGATCACACTTACGATGCAGTGGTCGTGGGAGCAGGTGGTGCTGGACTTAGGGCAGCCATAGGACTCTCAGAGCATGGATTCAATACTGCTTGTATTACCAAGCTTTTCCCAACTCGTTCGCACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCACTGGGGAACATGACAGAGGATGACTGGAGGTGGCATATGTACGACACGGTCAAAGGAAGTGATTGGTTAGGTGATCAGGACGCTATTCAGTACATGTGCCGGGAGGCACCAAAAGCAGTCATTGAACTCGAGAATTATGGACTGCCTTTTTCCCGAACTGAAGAGGGAAAAATTTATCAGCGTGCATTTGGTGGTCAGAGTCTTGATTTTGGAAAAGGAGGACAGGCATACCGCTGTGCATGTGCTGCTGACAGAACTGGCCACGCATTATTACATACTCTCTATGGACAGGCTATGAAGCATAACACCCAATTTTTTGTGGAGTATTTTGCTTTGGATCTAATGATGAATAATGATGGAACTTGCCAAGGAGTAATAGCATTAAATATGGAAGATGGGACTCTACATCGATTCCGTGCTGCATCAACTATTCTGGCTACCGGGGGTTATGGGAGAGCGTACTTCTCTGCCACTTCTGCTCATACTTGCACTGGAGATGGAAATGCGATGGTGGCACGGGCTGGGCTTCCACTTGAGGACTTGGAGTTTGTGCAGTTTCATCCAACAGGCATATACGGTGCTGGGTGTCTCATTACTGAAGGATCTCGTGGTGAAGGCGGTATTCTTCGGAACAGTGAAGGTGAGCGTTTCATGGAACGATATGCCCCAACAGCAAAGGATCTTGCATCCAGAGATGTTGTTTCAAGATCCATGACTCTGGAAATCCGTGAAGGCCGTGGTGTAGGACCTCTGAAGGACCACATTTATCTCCATTTAAACCACTTACCGCCAGACGTGCTCAAGGAGAGGCTCCCCGGTATTTCAGAGACTGCTGCAATTTTCGCTGGTGTGGATGTTACAAAAGAACCCATTCCTGTCTTACCTACGGTGCATTACAATATGGGTGGAATTCCAACAAATTACCACGGAGAGGTAGTTACCATTAAAGGCGATGATCTGGATTCAATAATCCCTGGATTAATGGCTGCTGGGGAGGCAGCGTGTGCTTCCGTTCATGGTGCCAACAGGCTCGGTGCGAATTCCCTTCTTGATATTGTGGTCTTTGGAAGAGCTTGTGCAAATAGAGTGGCAGAAATTCGAAAACCAGGGGAGAAACAAAAGCCATTGGAAAGTGATGCTGGTGAGAAGACTATTGCATGGCTAGACAAATTAAGGAACTCAAATGGCTCATTGCCAACTTCACAAATCCGGTTGAACTTGCAACGTGTCATGCAAAATAATGCTGCTGTGTTCCGTACTCAAGAAACATTAGAAGAAGGTTGTAAATTGGTCGACAAGACATGGGAGAGCTTCCATGATGTGAAGGTTCAAGATCGGAGTTTGATATGGAACTCCGACTTGATTGAGACCTTAGAATTGGAAAACCTGTTAATAAATGCATGCATTACCATGCACTCTGCTGAAGCTAGGAAAGAGAGCAGAGGAGCACATGCTCGTGAAGATTTTTCAACAAGAGACGATAAGAACTGGATGAAGCATACTTTGGGATACTGGGAAAATGAGAAGGTCCGATTGGATTACAGGCCGGTTCACATGAACACATTAGACGACGAGATTGAAACCTTCCCTCCTAAAGCTCGTGTGTACTAA 1920 46.41 MWRCVSRGLRASFLTSSSPSKRSTPGDVYRSHISRFFSVDSNAGSPSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLMMNNDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDLDSIIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIRKPGEKQKPLESDAGEKTIAWLDKLRNSNGSLPTSQIRLNLQRVMQNNAAVFRTQETLEEGCKLVDKTWESFHDVKVQDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHAREDFSTRDDKNWMKHTLGYWENEKVRLDYRPVHMNTLDDEIETFPPKARVY 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11199612 11204702 + Conep09aG0158700.1 Cone9ag1541 445704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1541 639 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 591 639 - -
Cone9ag1541 639 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 478 594 - -
Cone9ag1541 639 Gene3D succinate dehydrogenase protein domain 590 639 - -
Cone9ag1541 639 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 90 99 IPR003952 GO:0016491(InterPro)
Cone9ag1541 639 Gene3D - 56 463 IPR036188 -
Cone9ag1541 639 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 44 269 - -
Cone9ag1541 639 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 56 639 IPR014006 GO:0016627(InterPro)|GO:0022900(InterPro)|GO:0050660(InterPro)
Cone9ag1541 639 Pfam FAD binding domain 56 452 IPR003953 -
Cone9ag1541 639 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 294 397 IPR027477 -
Cone9ag1541 639 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 398 463 - -
Cone9ag1541 639 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 44 639 IPR030664 GO:0000104(PANTHER)|GO:0005749(PANTHER)|GO:0006121(PANTHER)|GO:0008177(PANTHER)|GO:0009055(PANTHER)|GO:0050660(PANTHER)
Cone9ag1541 639 PIRSF SDHA_APRA_LASPO 46 628 - -
Cone9ag1541 639 Pfam Fumarate reductase flavoprotein C-term 507 639 IPR015939 GO:0016491(InterPro)
Cone9ag1541 639 SUPERFAMILY FAD/NAD(P)-binding domain 47 475 IPR036188 -
Cone9ag1541 639 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 294 397 - -
Cone9ag1541 639 NCBIfam succinate dehydrogenase flavoprotein subunit 53 639 IPR011281 GO:0006099(InterPro)|GO:0016627(InterPro)|GO:0050660(InterPro)
Cone9ag1541 639 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 498 639 IPR037099 GO:0016491(InterPro)
Cone9ag1541 639 Gene3D - 479 589 - -
Cone9ag1541 639 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 284 402 IPR027477 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1541 K00234 - - rcu:8283123 1194.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0117 Cone-Chr11:528498 Cone9ag1541 Cone-Chr9:11199612 1.62E-72 dispersed
Cone6ag1616 Cone-Chr6:12482648 Cone9ag1541 Cone-Chr9:11199612 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41