Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1544 ATGTATGTAGGAAGCTGTAGTTTAAAACTCGATTGCCAATATCCAAACATGTATCTTCTTAGAAGGCGTTCTCAGAATCATGAAGAGGATGATCATTCTTCAAATCAAGATGGGAAGATCAACGAGCTAAGGGCTGCAATGGGACCGCTTTCGGGACGAGATTTGAAATACTGTAGTGATGGATGCTTGAGAAGATACTTAGTTGCTAGGAATTGGAATGTTGACAAGGCTAAGAAGATGCTTCAAGATTCACTCAAATGGAGGGCCGCTTACAAGCCGGAAGATATCCGTTGGCATGAAGTAGCACATGAAGGAGAAACAGGGAAAGTATCTATAGCAAACTTCCGTGATCGATTTGGCCGGACCGTGCTTATAACAAGGCCAGGGATGCAGAATACAGACTCACCGGAAGATAATGTTCGGCATCTAGTTTACATTTTAGAAAATGCTGTCTTCAACCTTCCAGAAGGTCAAGAACAAACGTCGTGGCTAATTGACTTCACCGGATTTTCTATAAGCACCAACATTTCGATCAAAGCATCCCGTGATATTATCAACATCCTTCAGATTCACTACCCCGAGCGGCTCGCCGTTTGTTTTCTTTATAACCCACCAAGGATTTTTCAGGCATTTTGGAAGGCTGTGAAGTATTTTGTGGACCAGAAGACATCCGAGAAGGTGAAGTTTGTATACACCAAAGATAACGAGAGCGTGGAGGTTATGAAGAAGTTTTTCGATATGGAGAATCTTCCGAGCGTTTTTGGAGGTAAAGCCACTCTCGAGTATAACCATGAGAACTTCTCTAGAATTATGGAACAAGACGAAGTTAAAATCGCCAAGTTTTGGGAACCGGATGTTCATGAAGAGAATCAAATCATTGATATCTATGGGAATGTCGAAGCAGAATTGTCACCAGAGCCCATAGCCGTTATGGCATCGGTTACCTGA 948 42.51 MYVGSCSLKLDCQYPNMYLLRRRSQNHEEDDHSSNQDGKINELRAAMGPLSGRDLKYCSDGCLRRYLVARNWNVDKAKKMLQDSLKWRAAYKPEDIRWHEVAHEGETGKVSIANFRDRFGRTVLITRPGMQNTDSPEDNVRHLVYILENAVFNLPEGQEQTSWLIDFTGFSISTNISIKASRDIINILQIHYPERLAVCFLYNPPRIFQAFWKAVKYFVDQKTSEKVKFVYTKDNESVEVMKKFFDMENLPSVFGGKATLEYNHENFSRIMEQDEVKIAKFWEPDVHEENQIIDIYGNVEAELSPEPIAVMASVT 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11220343 11221717 + Conep09aG0159100.1 Cone9ag1544 445707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1544 315 SMART CRAL_TRIO_N_2 59 84 IPR011074 -
Cone9ag1544 315 SUPERFAMILY CRAL/TRIO N-terminal domain 26 100 IPR036273 -
Cone9ag1544 315 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 100 262 IPR001251 -
Cone9ag1544 315 Pfam CRAL/TRIO, N-terminal domain 58 83 IPR011074 -
Cone9ag1544 315 Pfam CRAL/TRIO domain 107 256 IPR001251 -
Cone9ag1544 315 SUPERFAMILY CRAL/TRIO domain 98 272 IPR036865 -
Cone9ag1544 315 FunFam Phosphatidylinositol transfer protein 3 19 291 - -
Cone9ag1544 315 SMART sec14_4 104 259 IPR001251 -
Cone9ag1544 315 CDD SEC14 106 257 IPR001251 -
Cone9ag1544 315 PANTHER GH16843P 24 287 IPR052578 GO:0008526(PANTHER)
Cone9ag1544 315 Gene3D - 14 293 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1544 K26544 - - mdm:114820463 430.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0679 Cone-Chr9:3237934 Cone9ag1544 Cone-Chr9:11220343 4.56E-13 dispersed
Cone17ag1336 Cone-Chr17:9392753 Cone9ag1544 Cone-Chr9:11220343 1.21E-132 wgd
Cone8ag0807 Cone-Chr8:8126927 Cone9ag1544 Cone-Chr9:11220343 1.93E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82