Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1553 ATGGTGACTGATGTCACTGAAAATCAAGAAACCACGCGAAAGGCTCGATCTTTTAAGGTTCATAGTCTAATGTGCACAAAACTAATGAAATTAGTTGATCGAATCTTGAAAATATTGCCCCGAATAGAAGCTGCCAGACCTGGCTGGTCTACTGGATTACAGGCCCTTTGCTCCTTGAGCCATGCCATTAACAAAGCAAACCTTCTTCTTCAATATTGCAGCGAGTCTAGTAAACTTTACATGGCATTAACAGGGGATGCTATACTGTTAAGATGTCAGAGATCACAGAATTTATTGGAGCAGAATTTATGCCAATTTCAGGACAAGGTTCCTGTAATGCTAGCTGTGGAAGTTTCTAGAATATCTGATGATCTTAGAGGTGCAAAGTTTATTCTCAATCCATCCGAAGAAGAAGCAGGGAAGGCCGTCAAACAACTGCTAAAACAAAGAACTTCCGCGTCTGATTCTATAGAAGATTCTGAAATGATAACTTTTAGAATTGCTGCATCAAAGCTTCATCTAACATCAACCAAAGCAATCTTGATTGAGAGGAGATCCATTCAGAATTTTCTGAAAAAAGTTAATGAAAATGATTCGACAAAAAGAAAGATCTTGGCTTACCTTTTGAATCTTTTGAAGAAGTTAGAAAACTCATCCGATTTGGAAAAAGGAAATTCATTTGCAATTGAGGGGAATGATTCTGTTCAAAGGTCGGTACAAAATGGATCAGGTGAAATTGAATTTCTTGATAGTTTTGGTCATCCTCTGGAATTCAAGTGCCCGATTTCTTGTAGATTAATGTATGATCCTGTTGTTATTGCTTCCGGGCGGACATATGAACGTTTATGGATACAAAAATGGTTCGATGAGGGAAATGATACCTGCCCGGAAACGAAAACAAAACTGACCCATCTTTCAATGACTCCAAATATCACCTTGAAGGATTTAATCACAAGATGGTGTAAAATGCATGGTGTTACCATTCTTGACCCGAGCAGGCAAATATGCAAGCTTAACTCATGGGAAAATTCTTCGAATTCTATTGCTAGTTTAGGAAGCTCTATGAATGATATACGTTTCGAGATGGATTTGAGCAATGTCTCGCTTGGATCTCTTGATACTAGTTACGGCTCTGATTCTTTATCTCGTTCGAAGAATGTCAAAAATGGGGTAAGTTTGAGTTTGAAACGGGAAAAGGATTTAAACTTTCCGGGAAATCTTAGTGAGCTTCCATGGGAATCTCAATATAAAGTCATTGAAGATATGGAGATTTACTCAAAAGACATTTCTCAAGTTTTTCCGAAGTTAATGGAGAAAAATGTCATTGAGCAACTTACGAAATTTTTGAAGGATGCAGTCGACCGTAAAGATCCAAAAGCTCAGAGAGAAGGATCTGCACTATTACTTGCATTAGTTAGTAAAAACAGATGTCCTGACATTGTAGAAGACACATTCCGGATTTTCCCGGATTTGCTTGGTTCCAGAATAACAAAAGAAGTTCTTTCAACTCTTGAAGTGTTGTCTGGCCAGAAGAGTTATAGACATAAGTTCATAGCAGGTGGTGTCCTTAGACCCATTCTAGACTTCCTTAACTCGGATATTAGAGATTACCAAGAAATAGCCCTTAGAATACTCCGCAACTTGTCCTCAGACAGTGATATTCATTCCCACATTGTCTCTTTCCAATGTGTTCCAAAATTGGTTCCACTTTTCAAAGACAGTGATCTTGCGGGAAACTGTATCTTGGTTCTGAGAAATTTGTCAGAAACAGAGGAGGCCCGGGTTTCTATAGCTGCAACTAAAGGATGCATTGCTTCAATTGCTCAAATTCTAGAAACGGATGATGTGGAAGACCAAGAGAGTGCGGTTTTTGTTCTGCTTTCTTTATGTCTTCAGAAAGTTCAATATTGTCAGTTGGTTATGGATGAAGGTGTGATTCCTTCTCTTGTTAATATAGCTGTTAATGGAAGTGAAAAAGGGAAGGTGGGTGCACATGAAATGCTCCGGCAGTTGAGAGATATCGACTTCTTACCTGAGCAAGTATTATATGGGGATCGACTCGGGGAAAATCGGGACATGAAGAGTGATTTTGATGTGAAGAAACCTGGGTCGAAGGGGTCTCGTTTTTTCGGTAGGAAAATATCAATTTTCTCCCCTCGTAGGCAGAAGAAATGA 2175 38.99 MVTDVTENQETTRKARSFKVHSLMCTKLMKLVDRILKILPRIEAARPGWSTGLQALCSLSHAINKANLLLQYCSESSKLYMALTGDAILLRCQRSQNLLEQNLCQFQDKVPVMLAVEVSRISDDLRGAKFILNPSEEEAGKAVKQLLKQRTSASDSIEDSEMITFRIAASKLHLTSTKAILIERRSIQNFLKKVNENDSTKRKILAYLLNLLKKLENSSDLEKGNSFAIEGNDSVQRSVQNGSGEIEFLDSFGHPLEFKCPISCRLMYDPVVIASGRTYERLWIQKWFDEGNDTCPETKTKLTHLSMTPNITLKDLITRWCKMHGVTILDPSRQICKLNSWENSSNSIASLGSSMNDIRFEMDLSNVSLGSLDTSYGSDSLSRSKNVKNGVSLSLKREKDLNFPGNLSELPWESQYKVIEDMEIYSKDISQVFPKLMEKNVIEQLTKFLKDAVDRKDPKAQREGSALLLALVSKNRCPDIVEDTFRIFPDLLGSRITKEVLSTLEVLSGQKSYRHKFIAGGVLRPILDFLNSDIRDYQEIALRILRNLSSDSDIHSHIVSFQCVPKLVPLFKDSDLAGNCILVLRNLSETEEARVSIAATKGCIASIAQILETDDVEDQESAVFVLLSLCLQKVQYCQLVMDEGVIPSLVNIAVNGSEKGKVGAHEMLRQLRDIDFLPEQVLYGDRLGENRDMKSDFDVKKPGSKGSRFFGRKISIFSPRRQKK 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11266669 11269827 + Conep09aG0160100.1 Cone9ag1553 445716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1553 724 SMART arm_5 510 550 IPR000225 GO:0005515(InterPro)
Cone9ag1553 724 SMART arm_5 633 673 IPR000225 GO:0005515(InterPro)
Cone9ag1553 724 SMART arm_5 551 589 IPR000225 GO:0005515(InterPro)
Cone9ag1553 724 SMART Ubox_2 257 320 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone9ag1553 724 Pfam Kinesin-associated protein (KAP) 518 644 - -
Cone9ag1553 724 Pfam U-box domain 255 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone9ag1553 724 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone9ag1553 724 PANTHER U BOX DOMAIN-CONTAINING 24 674 - -
Cone9ag1553 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 328 IPR013083 -
Cone9ag1553 724 CDD RING-Ubox_PUB 255 307 IPR045210 -
Cone9ag1553 724 Gene3D - 422 675 IPR011989 -
Cone9ag1553 724 SUPERFAMILY ARM repeat 425 671 IPR016024 -
Cone9ag1553 724 SUPERFAMILY RING/U-box 254 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1553 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1136 Cone-Chr13:9000613 Cone9ag1553 Cone-Chr9:11266669 1.67E-83 dispersed
Cone19ag1117 Cone-Chr19:8027342 Cone9ag1553 Cone-Chr9:11266669 4.02E-80 dispersed
Cone8ag0740 Cone-Chr8:7457912 Cone9ag1553 Cone-Chr9:11266669 2.21E-88 dispersed
Cone12ag0765 Cone-Chr12:7041172 Cone9ag1553 Cone-Chr9:11266669 3.29E-165 wgd
Cone17ag1349 Cone-Chr17:9445026 Cone9ag1553 Cone-Chr9:11266669 2.44E-149 wgd
Cone6ag1628 Cone-Chr6:12536070 Cone9ag1553 Cone-Chr9:11266669 0 wgd
Cone8ag0814 Cone-Chr8:8171749 Cone9ag1553 Cone-Chr9:11266669 2.29E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50