Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1554 ATGTCCTTGAAAAGCATAATGAGAGAGTCTAAAGAAATGAAAGATGGGATTGGAAGTATATCAAGGCGAGGAGGAGAAAGGAAGCATTGGCGTAGCAGAACAAGGTCTTATATAGCACCAGATCAACCCCCTGCCTCGCCTGAGTTTATTGAACAAGGCCGTTGGGCTGATCTACCTTCCGAATTGCTTTTGGACATTATCCGGAGGGTAGAAGAGAGTGAAACGTCCTGGCCCGCTAGGGCCATTGTCCTTTTCTGCGCTTCGGTTTGTAAGTCATGGAGAGATGTTACAAAGGAGATTGTTAAAATGCCCGAGCAATGTGGGAGGCTCACGTTTCCCATCTCTTTGAAGCAGCCTGGGCCTCGTGAATCTCCTATTCAATGCTATATAAGAAGGGACAGAGTCAATTCAACCTATCTCCTCTATTTTGGTTTGCTTCCTTCGGAGAATGAGAATGATAAGTTACTTCTAGCAGCCAAGAGAATTAGACGGGCAAGAGGCACAGACTTTGCTATATCCTTAGTAAGTGATGATTTCTCTTGGTCCAGCAATACCTATGTCGGTAAATTGCGGTCAAATTTTTTGGGTACAAAATTTGTTATATATGACAGCCTACCCCCAAATGACTCAGTATCCAAACAAAACACTCGATCTAGCCATAGATTCCGGTCCAAACAAGTCTCTCCAAAAGTACCAGCTTGTAATTACAATGTAGGTACAATTTCTTACGAGCTTAATGTTCTCAGAACAAGAGGGCCAAGGAGAATGCATTGTGTTATGGATTCAATTCCAGTCTCTTGTTTACAAGATGGAGGAACTGCACCTACACCCACATCATTTTCATATTCTGTAAATGACCAAATTTGTCATAATCCCTTGCCTTCTTCTAAAGGAAAAGAGCCAATCATAGATTTTAGTTCCGCAAGCCTCTCCTCAGCTCCACCACCACCACACCTGGGATCAGAAGATTCATTGGTTCTGAAAAACAAAGCTCCTAGATGGCATGAACAGCTTCAATGCTGGTGCTTGAACTTCAGAGGGAGAGTTACAGTGGCTTCTGTCAAGAATTTCCAGCTTGTAGCAGCAACTGACCCGGCACATAATGTTTCAGCACAAGAGCAGGACAAAGTGATTTTGCAGTTTGGGAAAATTGGAAGAGATATTTTCACCATGGATTATCGTTACCCACTCTCTGCCTTCCAAGCTTTTGCAATCTGCTTGAGTAGCTTTGATACTAAACCGGCTTGTGAATGA 1254 43.14 MSLKSIMRESKEMKDGIGSISRRGGERKHWRSRTRSYIAPDQPPASPEFIEQGRWADLPSELLLDIIRRVEESETSWPARAIVLFCASVCKSWRDVTKEIVKMPEQCGRLTFPISLKQPGPRESPIQCYIRRDRVNSTYLLYFGLLPSENENDKLLLAAKRIRRARGTDFAISLVSDDFSWSSNTYVGKLRSNFLGTKFVIYDSLPPNDSVSKQNTRSSHRFRSKQVSPKVPACNYNVGTISYELNVLRTRGPRRMHCVMDSIPVSCLQDGGTAPTPTSFSYSVNDQICHNPLPSSKGKEPIIDFSSASLSSAPPPPHLGSEDSLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAATDPAHNVSAQEQDKVILQFGKIGRDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11270251 11272983 - Conep09aG0160200.1 Cone9ag1554 445717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1554 417 SUPERFAMILY F-box domain 52 99 IPR036047 GO:0005515(InterPro)
Cone9ag1554 417 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Cone9ag1554 417 PRINTS Tubby superfamily signature 395 417 IPR000007 -
Cone9ag1554 417 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Cone9ag1554 417 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cone9ag1554 417 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cone9ag1554 417 PRINTS Tubby superfamily signature 374 393 IPR000007 -
Cone9ag1554 417 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Cone9ag1554 417 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cone9ag1554 417 Pfam Tub family 116 412 IPR000007 -
Cone9ag1554 417 Gene3D - 50 101 - -
Cone9ag1554 417 SUPERFAMILY Tubby C-terminal domain-like 104 417 IPR025659 -
Cone9ag1554 417 PANTHER TUBBY-RELATED 45 416 - -
Cone9ag1554 417 Pfam F-box-like 55 98 IPR001810 GO:0005515(InterPro)
Cone9ag1554 417 Gene3D Tubby Protein; Chain A 113 417 IPR025659 -
Cone9ag1554 417 MobiDBLite consensus disorder prediction 1 46 - -
Cone9ag1554 417 ProSitePatterns Tub family signature 2. 402 417 IPR018066 -
Cone9ag1554 417 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0970 Cone-Chr8:9140265 Cone9ag1554 Cone-Chr9:11270251 1.64E-147 dispersed
Cone4ag1918 Cone-Chr4:13616392 Cone9ag1554 Cone-Chr9:11270251 1.65E-171 wgd
Cone6ag1629 Cone-Chr6:12539797 Cone9ag1554 Cone-Chr9:11270251 2.20E-286 wgd
Cone7ag1830 Cone-Chr7:11921540 Cone9ag1554 Cone-Chr9:11270251 5.13E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46917 PF00071 Ras 3.50E-63 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1554 K19600 - csv:101205595 626.706