Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1557 ATGGAGACTAACAATATTAATAATAATTCAGTCAGAATCTCGAACAGAGCCATCTCAGCCGCCGTGAAGCAACGGCGGAGCGGTTACGAGCCGTCCGATACAGAGACTGAGTGGAACGATGACGAGAGCCTCTGGAATAATAAGAGTATTAATCACAATCTAAACGACAGAGTGGTAGGCTTTTCGGATTTACGGCGAAATAGTCATTATAACAATATCAGTCAGATTCGACTCAGCCGGAGAGCGAATTCATCCAGGTTCGAATTCGATCAAATCTCTACCACTACTTCTGGAAAAGATCCAATTCGGATAAGAACTAGCAGCAAATCGCCGTACAGGCCGGCTAGAGAAGAAGTAGAAGAAGATGATGAAAACAATGATTTCACCTTTCCTCAGAAAAATTTCAGTCCGGTTCAAAGATTTGAGCGGAAGAAACAAACCTCACCATACAAATCCGCGATCGGAGATCAAAATCCGGAGAAGAAAATGATGCCGAAACCCCCAGGATACCATAGAAGGGCGGTCACCGCTCCGAGAATGAGGCCACCTTCAGTCGGCGAATTCAACGAAATGATCGCAAAAGCCAATATCTCGAAAAATCCAAAATCACATAACAATCCAGTAATAATTCAAAGCTCCGATTCAATTTCACCAGGTGATATATTCTTTTCCCTCGATCACACTCAAAACACTGTTTTCCGAAGCTATCTTAGCCCGAAACCAAAACTGATCTCTCAATCGGAAAGAGACCATTCAAATTCTGCTTCTTATCAACAAGTTAGAGGATCTTCTTCCAGGACGATATTTTCGAGTTCGGTTGTATCTAATGAAAAAAACTGTCCCCATATGTTGTTGAAGGGCCCACCTGGGGCAGGGAAAAGAGCTCTAACTATGGCTTTCTTACACGAACTATATGGCAATTCATGTTGGAATGTTTCTCATGATTTAAGAAACTTCCAGATTCCGGATAATAGACGGTCCGAAAGAGTGGTTGTTCCGCTAGCATCGAGTCCTCACCATGTGGAGTTGAACGTAAGCTTGGAAGCTAATTCCAAATATGCTTTAATGGGATTAGTCAAAGAAATCAGCAGTGAATATGCTCTCACCATTCCAGAACGCAGCACTGTTAGTATCAAACCACATTACAAAGTTGTAGTTCTTTATGGCATGGACAAATCGTCCGAGGACTTTCAGCACTTGATAAAGTGGATCATGGATTGCTACACAGATGTTTGCAGATTAATACTCTGCTGTGAAGACGATTCAAATATACTCGAACCCATTAAAACCCGATGTAAACTTGTCGAAGTTAACGCTCCATTACCTCATGAAATTATGGAGGTGCTTATGCAAATAGCAGGAAAGGAAGGATTTGATTTATCAATGAGTTTTGCATCGAAAATCACTACGAAATCGAAGCAGAACTTGAGAAGTGCTATAATGGGACTAGAAGCATGTAAAGCACATGGATACCCTTTCGTGGAGGAGCAACCGATTCCGATCGGATGGGAAGAGGCGGTTATGGAGCTTGCTTTCGAGATTCTAACTAACCCGTCACCTACCAGATTGTATATCATAAAGGAAAAGATTCAGAAGCTTCTAGTAGATTCTGTTCACCCAAATCTGATTCTCCAGAAGCTAGTGGAACAATTTCTAAAGAGAGCTGAAGGGAGTTTGAAAAGGGAGCTTCATTATTGGCATGCTTATTATAACAAGAGACTTCCGACAGGAACAAGTGCTTCTTCACTGAAACTAGAAGTTTCTAGGCACAGGACGCTGATGAACATATTTGACAAAGCTCCGGTAGTTGATAAGAATGCATTCATTGCCCTTAGTGCATCTGTCATTTGTGATGTTCAGGTGGGACGTAATGCCTCTATCTGGTATGGATGTGTTCTAAGAGCCTTCATGGTTGCTTTGTTCTTTATACTTGCTGCGTGTTTGATGCTGGAAAATGTACTATTATTTTTTGTAACAAATATTTTTCCATTGCTAAAATGGAGTGATTTGTTGTCCTTTTCTGAACAATTATTTTCTTCGTCTGCTGGTGATGTTAACAGCATCAATGTTTGTTCTGGCACTAATATTCAAGACAACTCGTTGTCCGTGTTGCAAAATCTAATTTTAGTGGGAAGTGCTGTCTTACATGGCTGCACTGTTGAGGATGAAGCTTTTGTTGGCATTGGTGCCACAGTGCTTGATGGGGTCCACGTGGAGAAACATGCAATGGTTGCACCCGGTGCCCTTGTCTGGCAAAACACAAGGATCCCCGCTGGAGAGGTATGGGGAGGGAATCCAGCAAAGTTTCTGAGGAAGTTCGCAGAAGAAGAGTTGGCCTTCATTTCCCAGTCCACATTTAACTACACCAACTTAGCACAAGTCCATGCTGCCGAAAATGCAAAGAGCTTTGATGAGATGGGGTTCGAGAAGGTGCTTCATAAGAAGTTTGCTCGCCGTGACGAGGAGTACTGCTCCATGCTGGCGGTAGTTAGGGAAACACCACCAGAACTTATCCTTCCTGATAATGTCTTGCCAGACAAAGTGGCCAAGGCTTCTGCTTAA 2562 42.58 METNNINNNSVRISNRAISAAVKQRRSGYEPSDTETEWNDDESLWNNKSINHNLNDRVVGFSDLRRNSHYNNISQIRLSRRANSSRFEFDQISTTTSGKDPIRIRTSSKSPYRPAREEVEEDDENNDFTFPQKNFSPVQRFERKKQTSPYKSAIGDQNPEKKMMPKPPGYHRRAVTAPRMRPPSVGEFNEMIAKANISKNPKSHNNPVIIQSSDSISPGDIFFSLDHTQNTVFRSYLSPKPKLISQSERDHSNSASYQQVRGSSSRTIFSSSVVSNEKNCPHMLLKGPPGAGKRALTMAFLHELYGNSCWNVSHDLRNFQIPDNRRSERVVVPLASSPHHVELNVSLEANSKYALMGLVKEISSEYALTIPERSTVSIKPHYKVVVLYGMDKSSEDFQHLIKWIMDCYTDVCRLILCCEDDSNILEPIKTRCKLVEVNAPLPHEIMEVLMQIAGKEGFDLSMSFASKITTKSKQNLRSAIMGLEACKAHGYPFVEEQPIPIGWEEAVMELAFEILTNPSPTRLYIIKEKIQKLLVDSVHPNLILQKLVEQFLKRAEGSLKRELHYWHAYYNKRLPTGTSASSLKLEVSRHRTLMNIFDKAPVVDKNAFIALSASVICDVQVGRNASIWYGCVLRAFMVALFFILAACLMLENVLLFFVTNIFPLLKWSDLLSFSEQLFSSSAGDVNSINVCSGTNIQDNSLSVLQNLILVGSAVLHGCTVEDEAFVGIGATVLDGVHVEKHAMVAPGALVWQNTRIPAGEVWGGNPAKFLRKFAEEELAFISQSTFNYTNLAQVHAAENAKSFDEMGFEKVLHKKFARRDEEYCSMLAVVRETPPELILPDNVLPDKVAKASA 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11281576 11286781 + Conep09aG0160500.1 Cone9ag1557 445720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1557 853 SUPERFAMILY post-AAA+ oligomerization domain-like 502 579 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone9ag1557 853 Pfam RCF1/5-like, AAA+ ATPase lid domain 447 487 - -
Cone9ag1557 853 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 273 581 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone9ag1557 853 FunFam replication factor C subunit 3 442 499 - -
Cone9ag1557 853 Gene3D Hexapeptide repeat proteins 594 803 - -
Cone9ag1557 853 Gene3D - 502 593 - -
Cone9ag1557 853 MobiDBLite consensus disorder prediction 93 168 - -
Cone9ag1557 853 SUPERFAMILY Trimeric LpxA-like enzymes 595 793 IPR011004 -
Cone9ag1557 853 CDD LbH_gamma_CA_like 602 793 IPR047324 -
Cone9ag1557 853 Pfam Replication factor C subunit 3, C-terminal domain 503 579 - -
Cone9ag1557 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 483 IPR027417 -
Cone9ag1557 853 Gene3D - 252 440 IPR027417 -
Cone9ag1557 853 Gene3D - 442 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1557 K10756 - - cit:102609520 418.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1637 Cone-Chr6:12561813 Cone9ag1557 Cone-Chr9:11281576 1.80E-93 dispersed
Cone4ag1919 Cone-Chr4:13624158 Cone9ag1557 Cone-Chr9:11281576 1.94E-83 wgd
Cone6ag1636 Cone-Chr6:12558775 Cone9ag1557 Cone-Chr9:11281576 0 wgd
Cone7ag1831 Cone-Chr7:11925516 Cone9ag1557 Cone-Chr9:11281576 1.03E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38