Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1561 ATGTATGAAGGATCTGAACCGTCTCAGAGGCACAAAATCACTACAGCTTTTCGCGACGCTTCAAGCCGTGGCCTCTCCATTGCTAGAACTTGGGCCTTTAGTGATGGTGAGCTCTTCAGTTATCTTCTGGCTCCTATAATGAGCAAACGTTTCAGGTCAGTTCTAAACTCTTACATAGTATCTGAGGCTAGAAAGTTTGGGATTAAGCTGATACTAAGTTTAGTGAACAATTATGAACACTTTGGAGGTAAAAAACAGTATGTGGAATGGGGAAGAAGCAAAGGACAGTCTCTTAATTCTGAAGACGATTTCTTTAGAAATGCCCTTCTTAAGGATTACTACAAGAATCATGCCAGGTCTCAGAAGCTTAACATGGTTACAAAGAGTTTTGCAAGGACTAGAAATGTTCAGAGGGGGAAGAAAGCCAGAGCAGCTAGAAACAGAGGAAGGCCGAATGGGGATTGA 465 42.15 MYEGSEPSQRHKITTAFRDASSRGLSIARTWAFSDGELFSYLLAPIMSKRFRSVLNSYIVSEARKFGIKLILSLVNNYEHFGGKKQYVEWGRSKGQSLNSEDDFFRNALLKDYYKNHARSQKLNMVTKSFARTRNVQRGKKARAARNRGRPNGD 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11300249 11301253 + Conep09aG0160900.1 Cone9ag1561 445724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1561 154 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 7 1 127 IPR045053 GO:0004553(InterPro)|GO:0016985(PANTHER)
Cone9ag1561 154 Gene3D Glycosidases 1 129 - -
Cone9ag1561 154 SUPERFAMILY (Trans)glycosidases 6 119 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1561 K19355 - - csv:101222408 149.443
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1510 Cone-Chr8:11420605 Cone9ag1561 Cone-Chr9:11300249 2.46E-19 dispersed
Cone4ag1924 Cone-Chr4:13644898 Cone9ag1561 Cone-Chr9:11300249 4.14E-40 wgd
Cone6ag1641 Cone-Chr6:12578776 Cone9ag1561 Cone-Chr9:11300249 6.46E-47 wgd
Cone7ag1837 Cone-Chr7:11948507 Cone9ag1561 Cone-Chr9:11300249 4.49E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1004 . . Bda04g00040 . . . Bma09g00085 . . . . Cma07g00474 Car03g00670 Car07g00417 Sed14g1137 Cpe19g00819 . Bhi03g01327 Tan03g2003 Cmetu03g1081 . Hepe04g1529 . . Cla01g01923 Cam01g2009 Cec04g1668 Cco04g1729 Clacu01g2030 Cmu01g1905 Cre04g1580 . . Cone6ag1642 Cone9ag1561 Lsi01g00664 . . Cme08g00863 Blo05g00803 Blo06g00139 . . Bpe10g00125 Bpe06g00041 . . . Cmo03g00765 Cmo07g00473 . . . . . . . . . . . . . . . . . . . . . Csa06g03259 Chy02g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020228 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3