Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1580 ATGGCAGGAGAAGAGGGCCAAGTTATCAGTTGCCACACTATTGAGGCATGGAATTATCAGATCGAGAAAGGCAAGAATTCCAATAAACTGGTACGTGCTAATCTTAAGACTAATGTCATGAAACAGTTTATTTCTTGTTGTGGATTTCACTTCATCTTGGTGCGGACCGTGCCATTTCTAGCCGAACTGGCTGAGAAAATCCCAAATGTCACCTTCCTTGAGGTTGATGTGGATGAACTCAAGTCGGTTGCTCAAGATTGGGCAGTGGAATCAATGCCTACTTTCATGTTCCTGAAAGGAGGGGAGATTTTAGACAAAGTGATTGGCGCCAAGAAAGAACTCCAACAGACCATAGCTAAGCATGGGGCTACTACTTCTGCTTGA 384 44.01 MAGEEGQVISCHTIEAWNYQIEKGKNSNKLVRANLKTNVMKQFISCCGFHFILVRTVPFLAELAEKIPNVTFLEVDVDELKSVAQDWAVESMPTFMFLKGGEILDKVIGAKKELQQTIAKHGATTSA 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11353844 11354381 - Conep09aG0163000.1 Cone9ag1580 445743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1580 127 CDD TRX_family 58 119 - -
Cone9ag1580 127 SUPERFAMILY Thioredoxin-like 57 120 IPR036249 -
Cone9ag1580 127 PANTHER THIOREDOXIN 5 121 IPR050620 -
Cone9ag1580 127 Gene3D Glutaredoxin 1 125 - -
Cone9ag1580 127 Pfam Thioredoxin 57 119 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1580 K03671 - - rcu:8266412 149.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0624 Cone-Chr8:6170987 Cone9ag1580 Cone-Chr9:11353844 3.79E-15 dispersed
Cone20ag0114 Cone-Chr20:506043 Cone9ag1580 Cone-Chr9:11353844 8.62E-36 wgd
Cone4ag1941 Cone-Chr4:13701435 Cone9ag1580 Cone-Chr9:11353844 8.96E-37 wgd
Cone6ag1656 Cone-Chr6:12637216 Cone9ag1580 Cone-Chr9:11353844 1.80E-53 wgd
Cone7ag1854 Cone-Chr7:11999130 Cone9ag1580 Cone-Chr9:11353844 3.61E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34