Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1584 ATGGCTGGGTTTTTCTCATTAGGCGGCCGAGGAGGAAGATCAGGAAGGTCAAGACCAAACCAAAACCAAAATCAAAATCAAAATCAAGAACAAGATAACCCCGAAATTCATCCGGACGCGGCCTTCTTCTGGTACAGAAATAACAATCCTCACCACCACCCTCATCATCATCAATGGCAGCAAGATCATCCTTACTCCTACGCGGCGGGCTGCCACAATATAAATGAATCTCTGCGGTCCACGTCAGTAGGACCGGGGTTTATGATGATGAGTGGTAGTACCAGCAGCAGCAGTAGTATAAGCTGCCAAGATTGCGGGAACCAAGCGAAGAAGGATTGCATTCACATGCGCTGTAGAACTTGCTGCAAGAGCCGAGGCTTCGATTGTCCGACTCACGTTACAAGCACTTGGGTTCCCGCCTCTAGACGGCGCGAACGCCAACAGCAACATCAACAAACTCATCTCTCTTCCCAACAACGACTTCAAATTCAACAGTCAAAGAGACAAAGAGATCATCAGGTCATTGATCCTAACACAACTACTGCTCCTGAAGCTTACTCCTCAGGTAATATGGAGGTGGCGAATTTTCCGGCAGAACTGAGCAGTCCAGCAGTGTTCCGGTGTGTTAGGGTGAGCTCAATCAACGATGGTGAGGATCAATTCGCTTATCAGACGGCTGTGAGTATAGGAGGGCATTTGTTCAAGGGAATTCTCTATGATCAAGGCGCTGATCATCACAATAACTACAATATACCACATGGCGAGACGTCGTCGGGTACGGGTGGCAGTACAGCTGGTGGCAGCGGCAGTGGGATTCAGCCCCTTAATCTCATGGCTGCTGCCGGAACCACCGTCGCCGGAGCAACACCAAGCAGTAGTACTCATCATCATCATGCGGGCGGTGGTGGTTCGTTTGATCCTAATTCTTTGTACTCAACTACGCAGATGAATAGTTTCAATATGGCTGGTACGCAATTTTTCCTTCCGCCTAGATCTTAG 999 48.95 MAGFFSLGGRGGRSGRSRPNQNQNQNQNQEQDNPEIHPDAAFFWYRNNNPHHHPHHHQWQQDHPYSYAAGCHNINESLRSTSVGPGFMMMSGSTSSSSSISCQDCGNQAKKDCIHMRCRTCCKSRGFDCPTHVTSTWVPASRRRERQQQHQQTHLSSQQRLQIQQSKRQRDHQVIDPNTTTAPEAYSSGNMEVANFPAELSSPAVFRCVRVSSINDGEDQFAYQTAVSIGGHLFKGILYDQGADHHNNYNIPHGETSSGTGGSTAGGSGSGIQPLNLMAAAGTTVAGATPSSSTHHHHAGGGGSFDPNSLYSTTQMNSFNMAGTQFFLPPRS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11367151 11368371 - Conep09aG0163400.1 Cone9ag1584 445747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1584 332 MobiDBLite consensus disorder prediction 250 271 - -
Cone9ag1584 332 MobiDBLite consensus disorder prediction 15 34 - -
Cone9ag1584 332 NCBIfam putative zinc finger domain, LRP1 type 101 143 IPR006510 -
Cone9ag1584 332 MobiDBLite consensus disorder prediction 248 309 - -
Cone9ag1584 332 MobiDBLite consensus disorder prediction 1 34 - -
Cone9ag1584 332 NCBIfam LRP1 C-terminal domain 196 242 IPR006511 -
Cone9ag1584 332 Pfam Domain of unknown function (DUF702) 99 244 - -
Cone9ag1584 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 326 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cone9ag1584 332 MobiDBLite consensus disorder prediction 139 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0735 Cone-Chr12:6778231 Cone9ag1584 Cone-Chr9:11367151 1.36E-62 dispersed
Cone5ag1461 Cone-Chr5:9602763 Cone9ag1584 Cone-Chr9:11367151 1.09E-41 dispersed
Cone12ag1176 Cone-Chr12:9305353 Cone9ag1584 Cone-Chr9:11367151 2.38E-12 wgd
Cone17ag1376 Cone-Chr17:9557174 Cone9ag1584 Cone-Chr9:11367151 1.83E-51 wgd
Cone20ag0106 Cone-Chr20:478496 Cone9ag1584 Cone-Chr9:11367151 9.87E-51 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone9ag1584 Cone-Chr9:11367151 1.82E-52 wgd
Cone6ag1659 Cone-Chr6:12647671 Cone9ag1584 Cone-Chr9:11367151 1.03E-147 wgd
Cone7ag1860 Cone-Chr7:12025045 Cone9ag1584 Cone-Chr9:11367151 5.37E-52 wgd
Cone8ag0832 Cone-Chr8:8313349 Cone9ag1584 Cone-Chr9:11367151 1.30E-59 wgd
Cone8ag1222 Cone-Chr8:10333267 Cone9ag1584 Cone-Chr9:11367151 4.97E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46919 PF02739 5_3_exonuc_N 6.30E-41 CL0280 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1584 K27807 - csv:101207689 239.965