Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1586 ATGTCTTCCGGGAAAATTCCTTCAACTTTTGGAAACTTGGAGAATCTACAGACCCTTGATTTGTCAAGAAATTTACTTTCTGGGAAAGTCTCTTATCAGCTGGCTAAGTTGCAGAGTTTTCAAAGCTTGGATCTTTCCTTCAATCCCCTTGGATTAATTGCTATTAGCAAAACTGGGATTAGAGGGGAGCTTCCAGAATGGTTATCTTCATCGTCAATATCAGTGCTTGATTTATCGTTTAATGCATTAACAGGAAAACTGCCCATTGGGATTGGAAACATGACCAATCTTTCATTCCTCAATTTATCAAGCAATGTATTTCATTCATCAATCCCAATTCAATTCAGAAACCTCACACTCCTCAGGGATGTTGACGGTCATTCAAATCGATTTTCGGGCAGCTTGAACAACATTATTATGAAAGAAACTCAAGACCCAATTGGCCATTTTAACTCCATTGATGTTTCGAAAAACATGTTCAGTGGTCTCATCGATGCTGATATAGGAGACAGACCAGGTATGGCTTCGATCAAATCACTCGTTTTATCAGACAGTCTATTGAGAGGAAATGTTCCAAAGTCAATTGGGAAACTTAACGAACTTCAGGTTCTAGATGTTATGAGAAACAAGATTTCTGGGAGGATTCCAGTTGAGCTTGGAAACGCAGAGGAGTTGACTGCCTTTTTGCTATCCGGAAACGAGCTTAGCGGTGAAATCCCAATCAAGGTTTTGAATTTAATGAATCTGGATAAATTCGACGTGTCGGATAATCGACTTAGCGGGAAAATCCCTCCTCACAAAGCTCATCTTCATGCCTCTGTTTTCTTTCACAACCCTGGCCTTTTGTGGTGTCCCACTTCCTCCATGCTATAA 873 40.21 MSSGKIPSTFGNLENLQTLDLSRNLLSGKVSYQLAKLQSFQSLDLSFNPLGLIAISKTGIRGELPEWLSSSSISVLDLSFNALTGKLPIGIGNMTNLSFLNLSSNVFHSSIPIQFRNLTLLRDVDGHSNRFSGSLNNIIMKETQDPIGHFNSIDVSKNMFSGLIDADIGDRPGMASIKSLVLSDSLLRGNVPKSIGKLNELQVLDVMRNKISGRIPVELGNAEELTAFLLSGNELSGEIPIKVLNLMNLDKFDVSDNRLSGKIPPHKAHLHASVFFHNPGLLWCPTSSML 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11382855 11383768 + Conep09aG0163600.1 Cone9ag1586 445749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1586 290 PANTHER OS10G0469600 PROTEIN 53 135 - -
Cone9ag1586 290 SUPERFAMILY L domain-like 4 266 - -
Cone9ag1586 290 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Cone9ag1586 290 Pfam Leucine Rich Repeat 73 94 IPR001611 GO:0005515(InterPro)
Cone9ag1586 290 Pfam Leucine Rich Repeat 248 266 IPR001611 GO:0005515(InterPro)
Cone9ag1586 290 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515(InterPro)
Cone9ag1586 290 Pfam Leucine rich repeat 7 50 IPR001611 GO:0005515(InterPro)
Cone9ag1586 290 Gene3D Ribonuclease Inhibitor 3 289 IPR032675 -
Cone9ag1586 290 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 172 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1586 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1663 Cone-Chr6:12666974 Cone9ag1586 Cone-Chr9:11382855 2.05E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31