Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1590 ATGAGAGCGGAGGGGATTTGGTTAATTATGCGAACTATTTGCGACGCTTGTGAGAGCGCGGCGGCGATTGTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGTCAATCTTGTGACGATAAGGTTCATATGTGCAATAAGCTAGCTAGCAGGCATGTTAGAGTTGGCCTTGCAGATCCGAGTGATGTTCCCCGTTGTGATATCTGTGAAAATGCACCCGCTTTCTTTTACTGTGAGATAGATGGAAGTTCGCTGTGTTTGCAATGTGACATGATTGTTCATGTTGGAGGTAAAAGAACACATAAGCGATACCTTCTACTTAGGCAAAGAGCCGAGTTTCCAGGGGATACTAAACCCAGCAATGTTGAGGCCAATCCACCTCCATTACCTATGGATACGAGCGAGACAAGAAAAATACAACAAAACCTGACACCGCAAAATTACAGGATCAGCTCACCTGTTGGAGATGTTAATGAAGATGGGCATCCCAAGTTGGATACTAAAATGATTGACCTCAATATGAAGCCTCACAGAATGCAAGGCCAAGCTTCAAATAATCAGGATCCATAG 567 44.44 MRAEGIWLIMRTICDACESAAAIVFCAADEAALCQSCDDKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRAEFPGDTKPSNVEANPPPLPMDTSETRKIQQNLTPQNYRISSPVGDVNEDGHPKLDTKMIDLNMKPHRMQGQASNNQDP 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11408047 11409462 - Conep09aG0164000.1 Cone9ag1590 445753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1590 188 CDD Bbox1_BBX-like 65 105 IPR049808 -
Cone9ag1590 188 MobiDBLite consensus disorder prediction 114 133 - -
Cone9ag1590 188 SMART bboxneu5 9 56 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 SMART bboxneu5 60 105 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 FunFam B-box zinc finger protein 19 11 101 - -
Cone9ag1590 188 Gene3D Classic Zinc Finger 10 105 - -
Cone9ag1590 188 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 PANTHER B-BOX ZINC FINGER PROTEIN 22 10 145 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone9ag1590 188 MobiDBLite consensus disorder prediction 147 166 - -
Cone9ag1590 188 ProSiteProfiles Zinc finger B-box type profile. 60 105 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 CDD Bbox1_BBX-like 13 56 IPR049808 -
Cone9ag1590 188 Pfam B-box zinc finger 12 43 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 Pfam B-box zinc finger 61 101 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1590 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1378 Cone-Chr17:9569772 Cone9ag1590 Cone-Chr9:11408047 2.99E-23 wgd
Cone20ag0105 Cone-Chr20:463874 Cone9ag1590 Cone-Chr9:11408047 1.06E-23 wgd
Cone4ag1948 Cone-Chr4:13737676 Cone9ag1590 Cone-Chr9:11408047 4.95E-23 wgd
Cone6ag1668 Cone-Chr6:12689471 Cone9ag1590 Cone-Chr9:11408047 3.29E-117 wgd
Cone8ag1235 Cone-Chr8:10391492 Cone9ag1590 Cone-Chr9:11408047 1.24E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1083 Blo04g00894 Blo16g00074 . Bda10g00172 . Bpe13g00423 . Bma15g00960 Cmo04g00794 . Cma03g00703 Cma07g00442 Car03g00645 Car07g00389 . Cpe19g00845 Cpe10g00649 Bhi03g00888 . . . . . . Cla01g01962 Cam01g2052 Cec04g1710 Cco04g1775 Clacu01g2073 Cmu01g1950 Cre04g1625 . . Cone6ag1668 Cone9ag1590 Lsi01g00620 . . Cme08g00909 . Blo06g00321 Bda11g01843 . . . . Bma06g00103 . Cmo03g00728 Cmo07g00440 . . . . . . . . . . . . . . . . . . . . . Csa06g03304 Chy02g00591 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag0338 . 10 383 C2C2-CO-like Transcription Factor Family AT5G15850 51.8 5.1e-54 209.1
Cone11ag0338 . 1 383 C2C2-CO-like Transcription Factor Family AT3G02380 52.7 1.9e-61 233.8
Cone7ag1644 . 1 323 C2C2-CO-like Transcription Factor Family AT5G24930 55.9 3.1e-67 253.1
Cone4ag1724 . 1 321 C2C2-CO-like Transcription Factor Family AT5G24930 57.1 7.7e-66 248.4
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 57.5 1.2e-93 340.9
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 1.6e-90 330.5
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone3ag1218 . 1 213 C2C2-CO-like Transcription Factor Family AT1G75540 50.5 3.3e-47 186.4
Cone6ag1668 . 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 64.4 7.0e-57 217.6
Cone9ag1590 . 10 187 C2C2-CO-like Transcription Factor Family AT2G21320 63.5 9.4e-54 207.2
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT2G21320 77.5 5.9e-40 161.4
Cone6ag1668 . 1 175 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 1.1e-55 213.8
Cone9ag1590 . 10 185 C2C2-CO-like Transcription Factor Family AT4G38960 63.1 2.4e-55 212.6
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT4G38960 76.5 1.3e-40 163.7
Cone3ag1218 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 8.3e-48 188.0
Cone10ag1103 . 1 118 C2C2-CO-like Transcription Factor Family AT4G39070 76.3 1.1e-47 187.6
Cone4ag1948 . 1 195 C2C2-CO-like Transcription Factor Family AT4G39070 51.7 1.2e-46 184.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46920 None None None None Cone TF