Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1590 ATGAGAGCGGAGGGGATTTGGTTAATTATGCGAACTATTTGCGACGCTTGTGAGAGCGCGGCGGCGATTGTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGTCAATCTTGTGACGATAAGGTTCATATGTGCAATAAGCTAGCTAGCAGGCATGTTAGAGTTGGCCTTGCAGATCCGAGTGATGTTCCCCGTTGTGATATCTGTGAAAATGCACCCGCTTTCTTTTACTGTGAGATAGATGGAAGTTCGCTGTGTTTGCAATGTGACATGATTGTTCATGTTGGAGGTAAAAGAACACATAAGCGATACCTTCTACTTAGGCAAAGAGCCGAGTTTCCAGGGGATACTAAACCCAGCAATGTTGAGGCCAATCCACCTCCATTACCTATGGATACGAGCGAGACAAGAAAAATACAACAAAACCTGACACCGCAAAATTACAGGATCAGCTCACCTGTTGGAGATGTTAATGAAGATGGGCATCCCAAGTTGGATACTAAAATGATTGACCTCAATATGAAGCCTCACAGAATGCAAGGCCAAGCTTCAAATAATCAGGATCCATAG 567 44.44 MRAEGIWLIMRTICDACESAAAIVFCAADEAALCQSCDDKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRAEFPGDTKPSNVEANPPPLPMDTSETRKIQQNLTPQNYRISSPVGDVNEDGHPKLDTKMIDLNMKPHRMQGQASNNQDP 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11408047 11409462 - Conep09aG0164000.1 Cone9ag1590 445753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1590 188 CDD Bbox1_BBX-like 65 105 IPR049808 -
Cone9ag1590 188 MobiDBLite consensus disorder prediction 114 133 - -
Cone9ag1590 188 SMART bboxneu5 9 56 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 SMART bboxneu5 60 105 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 FunFam B-box zinc finger protein 19 11 101 - -
Cone9ag1590 188 Gene3D Classic Zinc Finger 10 105 - -
Cone9ag1590 188 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 PANTHER B-BOX ZINC FINGER PROTEIN 22 10 145 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone9ag1590 188 MobiDBLite consensus disorder prediction 147 166 - -
Cone9ag1590 188 ProSiteProfiles Zinc finger B-box type profile. 60 105 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 CDD Bbox1_BBX-like 13 56 IPR049808 -
Cone9ag1590 188 Pfam B-box zinc finger 12 43 IPR000315 GO:0008270(InterPro)
Cone9ag1590 188 Pfam B-box zinc finger 61 101 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1378 Cone-Chr17:9569772 Cone9ag1590 Cone-Chr9:11408047 2.99E-23 wgd
Cone20ag0105 Cone-Chr20:463874 Cone9ag1590 Cone-Chr9:11408047 1.06E-23 wgd
Cone4ag1948 Cone-Chr4:13737676 Cone9ag1590 Cone-Chr9:11408047 4.95E-23 wgd
Cone6ag1668 Cone-Chr6:12689471 Cone9ag1590 Cone-Chr9:11408047 3.29E-117 wgd
Cone8ag1235 Cone-Chr8:10391492 Cone9ag1590 Cone-Chr9:11408047 1.24E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46920 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1590 - - - 0.0