Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1592 ATGGGGGCTGCTGATGGAGAGGAGGAAATGCCTGGAGTGGGTGACTCTGGGGAGAGGATACTTGTTTCAGTGCGGTTAAGGCCCTTGAATGAGAAGGAAATTGCAAGGAATGATGCATCCGATTGGGAATGCATCAATGATACCACTATCATACATAGAAACAGCCTTTCAGTTTCTGAGCGCTCCGTGTACCCTTCTGCCTATACATTTGACAGGGTATTTACGTATGATTGCTCAACTAGGAAGGTCTATGAAGACGGAGCAAAGGAAGTTGCCCTTTCTGTTGTTAGTGGCATTAATTCCACCATTTTTGCATATGGACAAACAAGCAGTGGAAAAACATACACCATGAGTGGAATTACTGAGTTCACAGTAGCAGACATTTTTAACTACATGGAGAAGCATATGGAGAGAGAATTTATTCTAAAGTTCTCTGCTATAGAGATTTATAATGAATCTGTCAGAGACCTCCTCAGTGCAGATAATACTCCTCTTAGACTCCTTGATGATCCAGAGAGAGGGACGATTGTGGAGAAAATCACAGAGGAAAGTATAAGCGACTGGAACCATTTTAAAGAACTTTTATCCTTATGTGAAGCTCAAAGGCAGATAGGAGAAACATCCCTAAATGTAGCAAGCTCAAGATCTCATCAGATTCTTAGACTGACAATCGAAAGTTCAGCACGTGAATTCTTAGGCAATGAGAAGTCGACTTTCCTTGCAGCAACTGTGAATTTTGTTGATCTTGCAGGAAGTGAACGTGCGTCTCAATCATTATCTGCTGGTGCAAGGTTGAAAGAAGGTTGCCACATAAATAGGAGTTTACTTACTCTGGGAACTGTTATTCGTAAGCTCAGCAAGGGAAGAAATGGACACATCCCTTTTAGAGACTCAAAATTGACCCGCATACTGCAGTCTTCTTTAGGGGGCAACGCTAGAACTGCCATCATTTGTACGATGAGCCCTGCACGGAGTCATATGGAGCAATCAAGAAACACCCTCTTGTTTGCAAGTTGTGCAAAAGAAGTGACAACTAATGCACAAGTGAATGTAGTGGTCTCTGATAAGGCATTGGTGAAGAAATTGCAAAGAGAATTGGCTAGATTAGAGACTCAGTTGAGAAGTTCAGGAGTAATTCCCTCAATATCTGATTCTGCTGCATTGCTGAGAGAAAAGGACTTTCAGATTGAGAAGCTAAAGGAAGAGATAAAAGAGTTAACTGTGCAACTAGACCTTGCTCGATCTCAGGTTCATATATCTGGAGATGATGAACCTCCAAAAGCATTGTCAGGTGGCCATGAACAATACCCCAAACTGAGAGTAAGAGGTTCATGGGACTTGGGAAATCAAATATCACCGTCACCATCGCCTGCAAATCCTCATTATCTAAATGTTAGTGTCGGATCTTTTGATGCGTCTCAGTATTCGGATGGACACAGTAGTAGTTCTGAGATTTATGAGCAACTTTTTGACTTTGAAGATAATTTCAAACAAACCATTCAAGAGATTTCCGAGTCTGAAACATGTCAAGAGGAGATTCAAGAGCAGTCCAATGATGATGTAGAAGATATCTGCAAGGATGTTAGATGCATTGAGATGGAAGAATCTAGTGCAAAAAGATATGTAAATACGAGTACGTCATATTTAAGCCCAGACAGATATTTGGGCTCATGCATGTCATCTCCTATAGAAAATCAATGTACCTCTGCACTGAAAGTGGTTGAAAATGGAGATGGGGGAAATGCTAAATTAGGGTTATCACTTCCTTTTAAGGAAGATAAGGAGTTGAGTAACTTCCATCCGATTTTTGTTGTTCCATCACCCGATAAATCATCTTCAAGGTCTGATTTTGGGAACTTGAAGTTAGCTAGAAGTAGAAGTTGTAAAGCGAGTCTTCGGACAAGTATGTCTTTGGAAGGGTTTGAGAAGCTAGGAAAGAATGAGACTACACCAACTTGGTGTGAGAAAGTTTTTCCTGGCGGATCTGAAAATTTCCTAAAGGAACCTCCTGCATACGAAGATATGTCTGACATCGAGAAGCTATCAAGAAATGGTTCTCAAACCCCCATAGCGAATGTTGCTGTTGATGAAGTTGATGAATTTGATGCAGAGAACATTGATACGCCAATTACTGAGAAGAAAATGGTTGAACATCAGACTGAACATCAACTTACTGACAATATGGTACTTGATACCGAATTAAACCCAGCAGGGTCAGCAAAAAATATGAAAGATGTTGGACTAGATCCAATTCCAGATGATTTAGAAAGTCAAGGATGGCCTTCAGAATTCAAGGCTCTACAAAGCAACATTATAGAACTTTGGCATTCATGCAATATATCACTGATTCATAGGACCTACTTCTTCCTGATGTTTAAAGGTGACCCAGCAGATTCCATTTACATGGAGGTTGAGTTCAGAAGGCTGTCCTTCCTCAGAGACACTTTTTCTCATGGAAATCAAACAATACAAGATGGTCGACTCTTGACACTAGCTTCAAGCATGAGGGATTTGCGTCACGAAAGACAGATGTTGAGCAAGCAAATGCAGAAGAGACTCTCCAAGCAAGAAAGAGAGGCCCTTTTCGTAGAGTGGGGAATTTCCTTAAGTTCGAGTCATAGAAGGTTGCAATTGGTTCACTGCTTGTGGACCGATCCCACCGATATGTACCATATAAGGAGGAGTGCTATTACTGTTGCTAAGCTGGTTGGCTATGTTGAGCCAGAGCAAGCTTTTAAGGGAATGTTTGGTCTTAATTTTACACCACCATTTAGAGGCCATAAATCTCGCGGATGGATGCACGGTTTGATATATTTCTCCTGA 2823 41.16 MGAADGEEEMPGVGDSGERILVSVRLRPLNEKEIARNDASDWECINDTTIIHRNSLSVSERSVYPSAYTFDRVFTYDCSTRKVYEDGAKEVALSVVSGINSTIFAYGQTSSGKTYTMSGITEFTVADIFNYMEKHMEREFILKFSAIEIYNESVRDLLSADNTPLRLLDDPERGTIVEKITEESISDWNHFKELLSLCEAQRQIGETSLNVASSRSHQILRLTIESSAREFLGNEKSTFLAATVNFVDLAGSERASQSLSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARSHMEQSRNTLLFASCAKEVTTNAQVNVVVSDKALVKKLQRELARLETQLRSSGVIPSISDSAALLREKDFQIEKLKEEIKELTVQLDLARSQVHISGDDEPPKALSGGHEQYPKLRVRGSWDLGNQISPSPSPANPHYLNVSVGSFDASQYSDGHSSSSEIYEQLFDFEDNFKQTIQEISESETCQEEIQEQSNDDVEDICKDVRCIEMEESSAKRYVNTSTSYLSPDRYLGSCMSSPIENQCTSALKVVENGDGGNAKLGLSLPFKEDKELSNFHPIFVVPSPDKSSSRSDFGNLKLARSRSCKASLRTSMSLEGFEKLGKNETTPTWCEKVFPGGSENFLKEPPAYEDMSDIEKLSRNGSQTPIANVAVDEVDEFDAENIDTPITEKKMVEHQTEHQLTDNMVLDTELNPAGSAKNMKDVGLDPIPDDLESQGWPSEFKALQSNIIELWHSCNISLIHRTYFFLMFKGDPADSIYMEVEFRRLSFLRDTFSHGNQTIQDGRLLTLASSMRDLRHERQMLSKQMQKRLSKQEREALFVEWGISLSSSHRRLQLVHCLWTDPTDMYHIRRSAITVAKLVGYVEPEQAFKGMFGLNFTPPFRGHKSRGWMHGLIYFS 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11412526 11418788 + Conep09aG0164200.1 Cone9ag1592 445755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1592 940 FunFam Kinesin-like protein 14 374 - -
Cone9ag1592 940 Coils Coil 352 379 - -
Cone9ag1592 940 Gene3D Kinesin motor domain 13 374 IPR036961 -
Cone9ag1592 940 SMART kinesin_4 17 351 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag1592 940 PRINTS Kinesin heavy chain signature 243 261 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag1592 940 PRINTS Kinesin heavy chain signature 98 119 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag1592 940 PRINTS Kinesin heavy chain signature 293 314 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag1592 940 PRINTS Kinesin heavy chain signature 207 224 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag1592 940 Coils Coil 389 416 - -
Cone9ag1592 940 Pfam Domain of unknown function (DUF3490) 763 922 IPR021881 -
Cone9ag1592 940 CDD KISc_CENP_E 20 343 - -
Cone9ag1592 940 ProSitePatterns Kinesin motor domain signature. 242 253 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cone9ag1592 940 PANTHER CENTROMERE PROTEIN E 17 924 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cone9ag1592 940 Pfam Kinesin motor domain 25 343 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag1592 940 ProSiteProfiles Kinesin motor domain profile. 19 343 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag1592 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 376 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1592 K11498 - - mdm:114822745 1062.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1095 Cone-Chr10:7662580 Cone9ag1592 Cone-Chr9:11412526 7.63E-277 dispersed
Cone12ag0729 Cone-Chr12:6687971 Cone9ag1592 Cone-Chr9:11412526 0 dispersed
Cone12ag1189 Cone-Chr12:9374447 Cone9ag1592 Cone-Chr9:11412526 6.82E-273 dispersed
Cone3ag1217 Cone-Chr3:30911045 Cone9ag1592 Cone-Chr9:11412526 6.53E-79 dispersed
Cone8ag1224 Cone-Chr8:10345782 Cone9ag1592 Cone-Chr9:11412526 1.83E-76 dispersed
Cone9ag1423 Cone-Chr9:10566317 Cone9ag1592 Cone-Chr9:11412526 1.37E-48 dispersed
Cone9ag1592 Cone-Chr9:11412526 Cone19ag1148 Cone-Chr19:8163943 1.53E-52 dispersed
Cone12ag1179 Cone-Chr12:9318641 Cone9ag1592 Cone-Chr9:11412526 4.05E-75 wgd
Cone17ag1382 Cone-Chr17:9583594 Cone9ag1592 Cone-Chr9:11412526 1.81E-206 wgd
Cone6ag1670 Cone-Chr6:12695803 Cone9ag1592 Cone-Chr9:11412526 0 wgd
Cone8ag1236 Cone-Chr8:10394395 Cone9ag1592 Cone-Chr9:11412526 2.40E-276 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1085 . . . . . . . . Cmo04g00793 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0729 Cone6ag1670 Cone9ag1592 . . Chy07g01228 . Blo05g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00582 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005179 0 5 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 0 1 1 6 1 1 40