Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1595 ATGAGAACTCGTAATGCAGGAAATCCGAAACCGACGCCGCCGATAAGGACACCGCCGACGAGGAAGGTCACCGCAAGAACTCCTCCGAAATCTGCCGGTTCTGGGTCGCAATCCGCGACTTCAAAACCCACCGAGTCAAAACGTGCAGCCGCGGCGAGAACGAGGCAGGCGAAGAAGAATGCAGCCTTGACAGCCACACCGATATCCAATTCGAAACCTAAACAGCCATCAGGCGAAGAGGTTGAAGCATCCGTTGATGTTACTCAAGCGACACCATCTAAGAAAGTTGCTACTTTTACAAGATCAGCCGCTAGGAGAGCGGGTGGGAAAATTAAAACACCTACTTCGATCAGTACAACACCTGAATCCGTAAAGGAAACGGATGAAGAACATAAAGGGGAGGAAGAACTAGTCGTTAAGGATGTAGAGATCAGTAAGGAGGAAGCTGATGTTGAAGATGTTGGAGAACATAAAGAGGAGGAAAAGATTGTCGTTAAGGATGTGGAGATCAGTAAGGAGGAAGCTGATGTTGAAGCTATTGGACAACATAAAGAGGAGGAAAAGATTTTCGTTAAGGATGTGGAGATCAGTAAGGAGGAACCTGTCGTAGAATATGTTGGAGATATTACTGAGAAGGAAGGAATTGAAGAATCTAAGGAGGAGGACGAGAAAGTTGAGAAGGCTGTGGAGATAAGTAAGGAGGAACCTGCTGTTGAAAATGTTGGAGACGTTTCTGAGATGGAAGGAGTGGAAGAACCTAAGGAGGAGGAAGAGATAGTCGGGAAGGACGTAAAGATCAGTGAGGAGGAACCTGCTTCTGAAAATGCTGTTGAACTGGCTGAGAAGGAAGGAATTGAAGAAGCTGAAGTGGAGAAAGTGATATTTGTTAAGGATGTGGAGGCCAGTAAGGAGGAACCTGATATTGAAAATGTTGGAGAGTCTGCTGACAAGGAACAAACCACCATGGAAGTGGACCAACCTTGTGACGAAGATGTTGGAGAATCTGCTGACAAGGAACGAACTGTCATGGGAGTGGATCAACGTTGTGCTAAAGATATTGGAGAACCTTCCAAGGAGAAAGAAAGCTCACTGGAAGTGGAAATTACTCCTATTATAAACATTGAAAAGTGTCCCAAAGCGGAGAGTTCTATCGATGCAGATGTTTTGCAGTCTTGGGCCAAAGCGGAATCTAGTGGTGCAGAGGTGGAAGATGAAACTTCAAAGGAGGTTACAAATGTTGAGGTTCAGGTAGAGACAAATGTTCAATCGGGTGATGTGGAACACAATATCAAAGAGGAGCTGGAAGGGCAACAGAGCAACCCTGTAAATGAAGAAGATGGCAGAAATAAAGTCGGGTATGATGATAAGGTGGACCTTGGGGAACATGGGGATGTAGAGCTTCATGATGATGATCCTGCTAAAGAAACTGATGCAATGGAAGAGGAACAAAGGGAATTGTCTGCACAAGCAAAGGAGCGAAAGATTAGAAAGGCGCATGAGATATTTGTTGGTGGGTTGGATCGTGATGCTTTGGAGGAAGATGTGAGAAAGGTGTTTGAGAGTATTGGAGAGATAGTCGATGTTAGGTTGCATAAGAACCCTTTAAATAATAAGAACAAGGGATATGCATTTGTGAAGTTTGCAAATAAGGAGCACGCTGCCCGGGCATTGGCAGAAATGAAAAACCCTGTTATACGTGGAAAGAGATGTGGAACTGTACCAAGTGCGGATAATGACACATTGTTTCTGGGTAATATATGCATCACGTGGTCAAAGGAAGTTACTGAACAAAAATTGAAGGATTATGGTGTTGAAGGTGTAGAGAGCATCACTCTTGTTGCAGATGCCCAAAATGAAGGCTTGAACCGAGGGTTTGCATTTGTTGAATTTTCCTGTCATGTTTATGCCATGAATGCATACAAGAGGCTTCAACAACCTGATGCCATTTTTGGTCACCCTGAGAGAACTGCTAAAGTGGCTTTTGCTGAACCCTTACGAGACCCGGACCCAGAGATCATGGCCCAGGTGAAGTCTGTCTTTGTTGATGGGGTTCCACCTCACTGGGATGACGCACATGTCAGGGAGCTTTGTAAAGGTTACGGAGAAATTGTACGGATTGTCCTGGCCAGAAATATGACAACAGCCAAAAGGAAGGATTTCGGATTTATTGATTTTTCCACCCATGAAGCTGCTATTGCTTGCATTGATGGTATCAACAATTCAGAATTCGGTGATGGAAACTCAAAGGGGAAAGTAAAGGCAAGGCTCTCAAATCCTTCGCCCAAAACTCAGGCTGTGAAAGGTGGAATTTGTGGTGGGTTTCGAATTGGTCATGGTGGGGAAAAACCATTGAACAATTTTGGAAGGGGTTTTGGGAGGGGTGGACAGTCCTTCCTGCGGCCACAGTTCACACGTGGTCGTGGCTTTCATCAAGGTGGACGGGGTCAAGGTGGTAGATCAGGTTTTCCAATCAACTTTGAATTTAATAATCCTAATCCTCAGTTTCAAGGGACGCAAAATATTGGCAGAGGGGAAAGCATGGGAACTTTCAGAGGTGGACATTATGACACTGGCAGAGGTGCTGCTGCTGCCACCCCATCGAGACCTTTTCTTGTTAGGCCATGGCATAATGCTCCTGATAGAGGCTATGGATTGGAGTCCTCTTCTAGGAGGCCTCCTTATTCTACTGAGGGACACTTCAACAGACCATTTCCTGGACAGCATTTTGACGATCTTTATCTCTATAATAACAATGCACATGGGAGAAAGCGCCCATTTTCTATGATGGACCATGATGCTGAGTTAATGGAGCCTGGTAGACTCCGTCAGCGATTTGATTATACTGATACAACAGCCTCATTCCAGGGAAATAACTACAGAGATGCACATGGTTCTGGTAGCAGTCGCTTCCCTCATGAGCACTATGGTCCAGATGTAAGAAATAATTCTCAGTATCGTGGAGGACCATATTCATCTAACCATGGTACTGGACCGCCTAATGGGGGTGGATACTACTATTAA 3021 45.15 MRTRNAGNPKPTPPIRTPPTRKVTARTPPKSAGSGSQSATSKPTESKRAAAARTRQAKKNAALTATPISNSKPKQPSGEEVEASVDVTQATPSKKVATFTRSAARRAGGKIKTPTSISTTPESVKETDEEHKGEEELVVKDVEISKEEADVEDVGEHKEEEKIVVKDVEISKEEADVEAIGQHKEEEKIFVKDVEISKEEPVVEYVGDITEKEGIEESKEEDEKVEKAVEISKEEPAVENVGDVSEMEGVEEPKEEEEIVGKDVKISEEEPASENAVELAEKEGIEEAEVEKVIFVKDVEASKEEPDIENVGESADKEQTTMEVDQPCDEDVGESADKERTVMGVDQRCAKDIGEPSKEKESSLEVEITPIINIEKCPKAESSIDADVLQSWAKAESSGAEVEDETSKEVTNVEVQVETNVQSGDVEHNIKEELEGQQSNPVNEEDGRNKVGYDDKVDLGEHGDVELHDDDPAKETDAMEEEQRELSAQAKERKIRKAHEIFVGGLDRDALEEDVRKVFESIGEIVDVRLHKNPLNNKNKGYAFVKFANKEHAARALAEMKNPVIRGKRCGTVPSADNDTLFLGNICITWSKEVTEQKLKDYGVEGVESITLVADAQNEGLNRGFAFVEFSCHVYAMNAYKRLQQPDAIFGHPERTAKVAFAEPLRDPDPEIMAQVKSVFVDGVPPHWDDAHVRELCKGYGEIVRIVLARNMTTAKRKDFGFIDFSTHEAAIACIDGINNSEFGDGNSKGKVKARLSNPSPKTQAVKGGICGGFRIGHGGEKPLNNFGRGFGRGGQSFLRPQFTRGRGFHQGGRGQGGRSGFPINFEFNNPNPQFQGTQNIGRGESMGTFRGGHYDTGRGAAAATPSRPFLVRPWHNAPDRGYGLESSSRRPPYSTEGHFNRPFPGQHFDDLYLYNNNAHGRKRPFSMMDHDAELMEPGRLRQRFDYTDTTASFQGNNYRDAHGSGSSRFPHEHYGPDVRNNSQYRGGPYSSNHGTGPPNGGGYYY 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11435870 11445021 - Conep09aG0164500.1 Cone9ag1595 445758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1595 1006 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 221 1006 - GO:0003723(PANTHER)|GO:0003729(PANTHER)|GO:0005634(PANTHER)
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 302 324 - -
Cone9ag1595 1006 Coils Coil 215 235 - -
Cone9ag1595 1006 SMART rrm1_1 580 660 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 SMART rrm1_1 678 755 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 SMART rrm1_1 500 573 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 CDD RRM_SF 679 745 - -
Cone9ag1595 1006 Gene3D - 467 577 IPR012677 -
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 59 98 - -
Cone9ag1595 1006 SUPERFAMILY RNA-binding domain, RBD 669 780 IPR035979 GO:0003676(InterPro)
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 255 275 - -
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 123 160 - -
Cone9ag1595 1006 Pfam RNA recognition motif 679 745 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 Pfam RNA recognition motif 591 645 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 Pfam RNA recognition motif 501 569 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 677 759 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 394 491 - -
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 27 47 - -
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 302 338 - -
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 447 491 - -
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 952 1006 - -
Cone9ag1595 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 569 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 984 998 - -
Cone9ag1595 1006 Gene3D - 666 774 IPR012677 -
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 228 275 - -
Cone9ag1595 1006 CDD RRM_SF 501 570 - -
Cone9ag1595 1006 SUPERFAMILY RNA-binding domain, RBD 500 644 IPR035979 GO:0003676(InterPro)
Cone9ag1595 1006 MobiDBLite consensus disorder prediction 1 160 - -
Cone9ag1595 1006 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 579 664 IPR000504 GO:0003723(InterPro)
Cone9ag1595 1006 FunFam Heterogeneous nuclear ribonucleoprotein Q 664 814 - -
Cone9ag1595 1006 Gene3D - 578 663 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1595 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0255 Cone-Chr14:1174019 Cone9ag1595 Cone-Chr9:11435870 4.14E-104 dispersed
Cone15ag0272 Cone-Chr15:1269764 Cone9ag1595 Cone-Chr9:11435870 1.68E-98 dispersed
Cone6ag1674 Cone-Chr6:12719781 Cone9ag1595 Cone-Chr9:11435870 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1092 . . Bda04g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1674 Cone9ag1595 . . . . Blo05g00824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017281 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 6