Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1602 ATGAGCGGTGGCGAAGATAAGCTGAGGGACCCTTTTCTTCTCGGTTATCAGCCATCTGAGTTCCGAATTGCGTCCGAGTTCCTCAACACTTGGCGTCCCTTCCTTTCGAGAGATCTATGCCCTAATTGCACCGAAATTCTCTCCTCTAGGATCCGCTCTCTTGACCAGGAACTTGTTGGCAAGGCAGAATCTGCACACTCTGAGGAAAAATCTACCTTCAATAATTTGGGATTACATGACAATCATGATGATAATTGTGACACAAATTCATTGGGGAGCTGGCAGGATGTTACTGAAAAGAATTCATCTGGGGGTTCAAAAGATGAGGAGAATGAAGGATCTGAATGCACACAAGAAGAAGAAGCTTTAGGTAGGGAAATAACCCTTGAATCACCATCCATGAAGACTCCAGAACCTCGAGTTTTGTGGGCTGACATGGCACTGGAAGATGAGCTTGAGGGAGAGGAAGAAGAGAGTGAAGAAAGCAAACGGCTAGTTAATTTAAATGCCTCAACAGGAAAGTTGACTATATCAAGAGTTGTTGAGAAGCTGAAGTTGCCGAGGGAACAGAGAGAGTACATTCGTTTTATGAATATCAACCAGAAGAAAGATTTCATGTGCTTTGAGCGGATCAATGGGAAACTTGTGAACATTCTTGAAGGACTTGAGCTTCATACTGGGATATTTAGTGCTGCAGAGCAGAAGAGAATAGTAAAACAGGTTTATCTACTTCAGGAGATGGGCAAGAAGGGAGAATTGAGAGAACGAACATACACAGCCCCTAGAAAGTGGATGAGGGGCAAAGGACGTGTAAATATCCAATTCGGATGCTGTTACAATTATGCAACTGATAAAAATGGTAATCCACCTGGCATCCTTCCGAATGGGAGTGTGGATCCCATGCCTCATCTTTTTAAGGTAATCATTAGGAGGCTGGTCCAGTGGCATGTACTTCCTCCAACCTGCATACCTGATAGTTGCATTGTCAACATCTATGATGAAGGTGACTGTATCCCTCCACATATTGACAACCACGATTTTGTGCGACCGTTTTGTACCATCTCGTTTCTAAGCGAATGCAATATTGTTTTTGGAACCAACCTAGAGGTTAAGGGCCCCGGTGAATTCACTGGCCCCATTTCGATCCCTCTTCCTATGGGGTCTGTACTGGTGTTGAATGGAAATGGAGCTGATGTGGCTAAGCATTGTGTACCTGCAGTACCTCAGAAAAGAATATCAATCACATTCAGAAGAATGGATGAAAGAAAACGACCCATTGACTTCATACCAGAACCTGATTTGCTGGATATTCAACCACTGTCCTATGATGTTGACAAAATAAATAGACCACTTTCACATGGGTCTGTTCCTGAGACGAGGAGGCATCATCAAAGGAAGGGTAGCAATATAAATGCAAGGAGATCCATGGAGAGATATGCTACTGCACAGTCGGAGCCTCGCAATTCAACTCGGACTTGGCACAGGCCTTTTGATAGGAGGAGGGTCAGCTTAAATCTAGACGGTTGA 1527 44.07 MSGGEDKLRDPFLLGYQPSEFRIASEFLNTWRPFLSRDLCPNCTEILSSRIRSLDQELVGKAESAHSEEKSTFNNLGLHDNHDDNCDTNSLGSWQDVTEKNSSGGSKDEENEGSECTQEEEALGREITLESPSMKTPEPRVLWADMALEDELEGEEEESEESKRLVNLNASTGKLTISRVVEKLKLPREQREYIRFMNINQKKDFMCFERINGKLVNILEGLELHTGIFSAAEQKRIVKQVYLLQEMGKKGELRERTYTAPRKWMRGKGRVNIQFGCCYNYATDKNGNPPGILPNGSVDPMPHLFKVIIRRLVQWHVLPPTCIPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTISFLSECNIVFGTNLEVKGPGEFTGPISIPLPMGSVLVLNGNGADVAKHCVPAVPQKRISITFRRMDERKRPIDFIPEPDLLDIQPLSYDVDKINRPLSHGSVPETRRHHQRKGSNINARRSMERYATAQSEPRNSTRTWHRPFDRRRVSLNLDG 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11477375 11480370 - Conep09aG0165200.1 Cone9ag1602 445765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1602 508 SUPERFAMILY Clavaminate synthase-like 218 419 - -
Cone9ag1602 508 MobiDBLite consensus disorder prediction 87 101 - -
Cone9ag1602 508 Coils Coil 145 165 - -
Cone9ag1602 508 MobiDBLite consensus disorder prediction 474 490 - -
Cone9ag1602 508 MobiDBLite consensus disorder prediction 451 496 - -
Cone9ag1602 508 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 9 472 IPR044842 GO:0003729(InterPro)|GO:0006402(InterPro)|GO:0032451(InterPro)
Cone9ag1602 508 MobiDBLite consensus disorder prediction 73 138 - -
Cone9ag1602 508 Gene3D - 205 427 IPR037151 -
Cone9ag1602 508 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 323 420 IPR005123 -
Cone9ag1602 508 MobiDBLite consensus disorder prediction 102 126 - -
Cone9ag1602 508 Pfam 2OG-Fe(II) oxygenase superfamily 224 417 IPR027450 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1602 K10767 - - vvi:100250563 626.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0912 Cone-Chr10:4729406 Cone9ag1602 Cone-Chr9:11477375 2.86E-129 dispersed
Cone9ag0371 Cone-Chr9:1652969 Cone9ag1602 Cone-Chr9:11477375 1.97E-35 dispersed
Cone6ag1680 Cone-Chr6:12759498 Cone9ag1602 Cone-Chr9:11477375 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48