Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1605 ATGACGTCGTGCGCTTCGCTGTACGAGATCTTAGGCATCCCCGCCTTTGCCTCCTTCCATGAGATTAAGACGGCGTACCGTCAACTGGCCAGGATCTGTCACCCTGACGTGGCGGCGCCGAATAGCAAGGATTCTTCCGCCGACGAATTCATCAAGATTCACGCTGCGTATTCCACTCTCTCGGATCCTGAGAAACGTGCCGACTATGATCGGAAACGTCTCCACCGGTACCGTACGTTAAATTCTGCTGCGACGGTGTCTGGATTCGCCGTCGGCTACACTCAGCGGAACTGGGAGACTGATCAGTGCTGGTAG 315 55.56 MTSCASLYEILGIPAFASFHEIKTAYRQLARICHPDVAAPNSKDSSADEFIKIHAAYSTLSDPEKRADYDRKRLHRYRTLNSAATVSGFAVGYTQRNWETDQCW 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11489957 11490578 + Conep09aG0165500.1 Cone9ag1605 445768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1605 104 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cone9ag1605 104 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cone9ag1605 104 PRINTS DnaJ domain signature 45 65 IPR001623 -
Cone9ag1605 104 CDD DnaJ 8 62 IPR001623 -
Cone9ag1605 104 SMART dnaj_3 5 65 IPR001623 -
Cone9ag1605 104 Pfam DnaJ domain 7 70 IPR001623 -
Cone9ag1605 104 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
Cone9ag1605 104 Gene3D DnaJ domain 1 88 IPR036869 -
Cone9ag1605 104 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Cone9ag1605 104 SUPERFAMILY Chaperone J-domain 3 78 IPR036869 -
Cone9ag1605 104 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 3 76 IPR052276 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1605 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1223 Cone-Chr12:9506625 Cone9ag1605 Cone-Chr9:11489957 3.58E-33 dispersed
Cone14ag0245 Cone-Chr14:1132276 Cone9ag1605 Cone-Chr9:11489957 3.05E-16 dispersed
Cone14ag1266 Cone-Chr14:10145938 Cone9ag1605 Cone-Chr9:11489957 1.24E-21 dispersed
Cone15ag0262 Cone-Chr15:1234418 Cone9ag1605 Cone-Chr9:11489957 6.76E-17 dispersed
Cone15ag1289 Cone-Chr15:10089113 Cone9ag1605 Cone-Chr9:11489957 4.99E-22 dispersed
Cone7ag0410 Cone-Chr7:1824178 Cone9ag1605 Cone-Chr9:11489957 8.53E-16 dispersed
Cone9ag1605 Cone-Chr9:11489957 Cone12ag1479 Cone-Chr12:10570980 7.19E-06 dispersed
Cone20ag0073 Cone-Chr20:351980 Cone9ag1605 Cone-Chr9:11489957 3.07E-24 wgd
Cone8ag0852 Cone-Chr8:8468277 Cone9ag1605 Cone-Chr9:11489957 1.07E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66