Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1607 ATGGCTGCCGCGGTAACGGCTGCAGTTTCTTTTCCATCCTCCAAGTCTTCCTCTATTCCAAACAGGACTTCTATCATCTCCCCTGATAAAATCACCTTCAAAAAGGTCCCGAATTTGTATTACCGAGAGGTATCGAATGGCGGAAGAGTGGTGTCGATCAGAGCTCAGGTCACAACAGAAGCTCCTGCTAAGGTGGAGAAGAAAGAATCAAAGAAAAACGAGGAAGGAGTGGTTGTGAACAAGTTCAAGCCCAAGAATCCTTACGTTGGAAGATGCCTTCTCAACACAAAGATCACTGGTGATGATGCTCCTGGAGAAACCTGGCACATGGTTTTCAGTACCGAAGGAGAGGTTCCGTACAGAGAAGGGCAATCGATCGGAGTAATCCCGGACGGTATAGACAAGAACGGGAAGCCACACAAGCTCAGGCTTTACTCAATTGCAAGCAGTGCTATTGGTGACTTCGGAGACTCCAAAACTGTTTCTCTGTGTGTGAAACGGCTCGTTTACACGAATGAGCAAGGAGAAATTGTTAAAGGAGTGTGCTCCAACTTTTTATGTGACTTGAAACCTGGAGCCGAAGTCCAGATTACAGGTCCAGTTGGGAAAGAAATGCTTATGCCCAAAGACCCTAACGCCACTGTCATAATGCTTGCCACTGGAACTGGAATTGCTCCTTTCAGATCCTTCTTGTGGAAAAAGTTCTTCGAGAAGCACGAAGACTATAAGTTCAATGGCTTGGCCTGGCTTTTCTTGGGTGTCCCAACAAGTAGCTCTCTGCTTTACAAGGAGGAGTTTGAGAAAATGAAAGAGAAGGCCCCAGAGAAGTTCAGGTTGGACTTTGCTGTGAGTAGAGAGCAGACGAATGAGAAGGGAGAGAAGATGTATATTCAGACCAGAATGGCGCAGTATGCTGAAGAGCTATGGGAGTTGCTAAAGAAAGACAACACGTTTGTCTATATGTGTGGGCTCAAAGGCATGGAAAAAGGAATCGATGATATCATGATCCCATTGGCTCAAAAAGAAGGCATAGATTGGGTGGAGTACAAACGACAGTTGAAGAAAGCAGAGCAATGGAATGTGGAAGAACAAATAAACCGCGCTCAACGACCGCAAAAACGACCGGGAACGTGTAATACAAGGGAGCGAACTAACGAAATTAGGGGCGGAAGAGGTGGATTAGGGTTTTCCTCCATAAATGCTGCTTCTATAAAACGGCTCTCAGATCTCTTTGCGGTCTCCTCAATCTCATTCTCTTACTTTCTGTCGTTAGCCTTCCGTTCTGTCCTGTCTCAATACCTAATAATCAATGGCGGAGGAGCGATTGACCGGCGTCGTTCAGTGGTTCAGCGACTCCAAAGGCTTTGGTTTTATCAAGCCAGATGGAGATGGGGAGTCCATCAATCATCGATCAAATCGGACAACTACCGTAGCCTAGTGGTCGGCGAGCACGTCGAGTTCCAGATTGCTTCCGGCGAGGATGGAAAATCCAAAGCCGTAGACGTCATTGATCTGGATGGAATCTACTGGGCAAGCGCACAGGAAAGATACCTATGGTGGTGGAAGTGGTGGCCGCGGGACTGCACTCGCGGAAGTAACCGTGGCAGCGGCAGTGGAGGTGGCTGTTATAGTTGTGGCGAGGCTGGTCATATGGCCAGAGATTGTCCTCAAGGAAACAGTAGTGTCGGCGGTTCTGGGAGTTGCTATAACTGTGGTGGATTTGGGCACTTAGCCAGAGACTGTCGTAGTAAGGGAGGCGGTGGGAACGGAGGTGAAGGTGGTGGATGCTTCAAATGTGGGGAACACGGGCACTTGGCAAGGGATTGTATGAAAGCTGGTGGAGGTGGTGGTGGCAGAACGGGAAGGTTTGGTGGTGGAGGCAGAGCTGGCGGTGGAGTTGGCTGCTTTAATTGTGGGGAGCCAAATCATTTTGCAAGAGAGTGTCCTAGTGCGGCTTAA 1959 48.6 MAAAVTAAVSFPSSKSSSIPNRTSIISPDKITFKKVPNLYYREVSNGGRVVSIRAQVTTEAPAKVEKKESKKNEEGVVVNKFKPKNPYVGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNEQGEIVKGVCSNFLCDLKPGAEVQITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKKFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPEKFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMIPLAQKEGIDWVEYKRQLKKAEQWNVEEQINRAQRPQKRPGTCNTRERTNEIRGGRGGLGFSSINAASIKRLSDLFAVSSISFSYFLSLAFRSVLSQYLIINGGGAIDRRRSVVQRLQRLWFYQARWRWGVHQSSIKSDNYRSLVVGEHVEFQIASGEDGKSKAVDVIDLDGIYWASAQERYLWWWKWWPRDCTRGSNRGSGSGGGCYSCGEAGHMARDCPQGNSSVGGSGSCYNCGGFGHLARDCRSKGGGGNGGEGGGCFKCGEHGHLARDCMKAGGGGGGRTGRFGGGGRAGGGVGCFNCGEPNHFARECPSAA 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11498760 11501994 + Conep09aG0165700.1 Cone9ag1607 445770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1607 652 PIRSF FNR-PetH 2 364 IPR035442 GO:0016491(InterPro)
Cone9ag1607 652 CDD CYPOR_like_FNR 80 362 - -
Cone9ag1607 652 Gene3D - 463 502 IPR012340 -
Cone9ag1607 652 FunFam Ferredoxin--NADP reductase, chloroplastic 202 364 - -
Cone9ag1607 652 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 85 207 IPR017927 GO:0016491(InterPro)
Cone9ag1607 652 ProSiteProfiles Zinc finger CCHC-type profile. 635 650 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 SUPERFAMILY Retrovirus zinc finger-like domains 531 584 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 Gene3D Translation factors 54 201 - -
Cone9ag1607 652 Gene3D - 524 562 - -
Cone9ag1607 652 PANTHER - 50 362 IPR015701 GO:0003959(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)|GO:0098807(PANTHER)
Cone9ag1607 652 Gene3D - 202 363 IPR039261 -
Cone9ag1607 652 MobiDBLite consensus disorder prediction 1 21 - -
Cone9ag1607 652 Pfam Zinc knuckle 595 611 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 Pfam Zinc knuckle 541 557 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 Pfam Zinc knuckle 567 582 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 Pfam Zinc knuckle 634 650 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 Gene3D - 563 590 - -
Cone9ag1607 652 Gene3D - 591 619 - -
Cone9ag1607 652 Gene3D - 628 652 - -
Cone9ag1607 652 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 210 362 IPR039261 -
Cone9ag1607 652 SUPERFAMILY Riboflavin synthase domain-like 71 206 IPR017938 -
Cone9ag1607 652 ProSiteProfiles Zinc finger CCHC-type profile. 542 557 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 ProSiteProfiles Zinc finger CCHC-type profile. 596 609 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 294 310 IPR001709 GO:0016491(InterPro)
Cone9ag1607 652 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 180 189 IPR001709 GO:0016491(InterPro)
Cone9ag1607 652 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 143 150 IPR001709 GO:0016491(InterPro)
Cone9ag1607 652 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 318 326 IPR001709 GO:0016491(InterPro)
Cone9ag1607 652 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 246 255 IPR001709 GO:0016491(InterPro)
Cone9ag1607 652 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 120 130 IPR001709 GO:0016491(InterPro)
Cone9ag1607 652 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 258 269 IPR001709 GO:0016491(InterPro)
Cone9ag1607 652 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 216 235 IPR001709 GO:0016491(InterPro)
Cone9ag1607 652 SUPERFAMILY Retrovirus zinc finger-like domains 587 650 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 Pfam 'Cold-shock' DNA-binding domain 466 503 IPR002059 GO:0003676(InterPro)
Cone9ag1607 652 PIRSF Frd-NADP+_RD 1 364 IPR015701 GO:0016491(InterPro)
Cone9ag1607 652 Pfam Oxidoreductase NAD-binding domain 217 331 IPR001433 GO:0016491(InterPro)
Cone9ag1607 652 FunFam Ferredoxin--NADP reductase, chloroplastic 69 201 - -
Cone9ag1607 652 SMART c2hcfinal6 541 557 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 SMART c2hcfinal6 595 611 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 SMART c2hcfinal6 634 650 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 SMART c2hcfinal6 567 583 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone9ag1607 652 ProSiteProfiles Zinc finger CCHC-type profile. 568 583 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1607 K02641 - - gmx:100802032 643.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1275 Cone-Chr8:10525508 Cone9ag1607 Cone-Chr9:11498760 1.05E-06 dispersed
Cone9ag1130 Cone-Chr9:7780413 Cone9ag1607 Cone-Chr9:11498760 2.39E-88 dispersed
Cone6ag1685 Cone-Chr6:12779373 Cone9ag1607 Cone-Chr9:11498760 7.76E-254 wgd
Cone8ag0853 Cone-Chr8:8472957 Cone9ag1607 Cone-Chr9:11498760 4.36E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1118 . Blo16g00081 . . . Bpe13g00414 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1685 Cone9ag1607 . . . . . . Bda11g01835 . . . . Bma06g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01103 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009581 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46921 PF14543 TAXi_N 2.20E-50 CL0129 Cone TF