Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1609 ATGGACATTCTCCTTTGCCTCATTATTCTCATCCTTGGCCAAGGAGTTTCTGGCGCTACGTTCACATTTACAAACAAGTGTGACTTCACAGTGTGGCCAGGAATTCTAGCCGGTGCAGGCAGCCCCAAGCTAGATACAACCGGCTTCGAGCTTCCAAAAGCCACCTCTCACTCTTTCCAAGCCCCAACGGGCTGGTCAGGTCGCTTTTGGGGTCGAACTGGCTGCAACTTTGACAGCTCCAGTGCTGGAAGCTGCACCACCGGCGATTGCGGCTCCGGAGAGGTCGAGTGCAATGGCTCAGGTGCTACTCCTCCAGCTACTTTAGCCGAGTTCACACTTGGCTCCGGCTCATTAGATTTCTATGATGTGAGCCTGGTAGATGGGTACAACATACCCATGGTCATTGAAGGTATACGTGGGTCAGGTAGTTGCGGGTCAACGGGTTGTTTATCGGATTTGAACCGGATGTGTCCGATGGAGCTGAAGACTGAGGGTGGAGAGGGGTGTAAGAGCGCATGTGAGGCTTTTGGGACAGCAGAGTATTGTTGTAGCGGCGAGTATAATTCACCCGCGACCTGTAAGCCGTCTATATACTCACAGATTTTCAAGTCAGCGTGTCCCAAATCTTACAGTTACGCTTATGATGATGCCACCAGTACTTTTACTTGCTCTGGAGCAGATTATACCGTCACATTTTGCCCTTCTTTCCCAAGCCTGAAATCTTCAAGTGACTCATCAGCAAATGCAACTAGTGATGACAAGCCATCAATGCAAGGATCGGGATCGGAAACAGAGCCAATAGGGGAAGCAACACTGGCTAATTCGTGGCTTGCTAATTTAGCCACAGGGGTTTATGGGTATAGGAGATGCAGTTCATGGGGTAAAAGGTGGCAGTGGGTACAGGGGAAGGTTCCAAAATTTGGCATAAAGCAGAAAATGAACCTGATGCGCACATTTGTGCATGGTTCCACCAAGGAAAAGTTTCAGCAAAAAAATGTCGCTGTAACTCTGTACAAGTATGCCCGATTAAAGAATCCAAAGATGGGTGCAATCCAAAAATGCATACCAAAGGTTCATTAG 1080 48.61 MDILLCLIILILGQGVSGATFTFTNKCDFTVWPGILAGAGSPKLDTTGFELPKATSHSFQAPTGWSGRFWGRTGCNFDSSSAGSCTTGDCGSGEVECNGSGATPPATLAEFTLGSGSLDFYDVSLVDGYNIPMVIEGIRGSGSCGSTGCLSDLNRMCPMELKTEGGEGCKSACEAFGTAEYCCSGEYNSPATCKPSIYSQIFKSACPKSYSYAYDDATSTFTCSGADYTVTFCPSFPSLKSSSDSSANATSDDKPSMQGSGSETEPIGEATLANSWLANLATGVYGYRRCSSWGKRWQWVQGKVPKFGIKQKMNLMRTFVHGSTKEKFQQKNVAVTLYKYARLKNPKMGAIQKCIPKVH 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11505533 11507468 + Conep09aG0165900.1 Cone9ag1609 445772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1609 359 FunFam THAUMATIN-LIKE PROTEIN 1 19 234 - -
Cone9ag1609 359 CDD TLP-PA 20 233 - -
Cone9ag1609 359 Pfam Thaumatin family 25 234 IPR001938 -
Cone9ag1609 359 ProSiteProfiles Thaumatin family profile. 18 234 IPR001938 -
Cone9ag1609 359 PRINTS Pathogenesis-related protein signature 119 135 IPR001938 -
Cone9ag1609 359 PRINTS Pathogenesis-related protein signature 224 233 IPR001938 -
Cone9ag1609 359 PRINTS Pathogenesis-related protein signature 20 32 IPR001938 -
Cone9ag1609 359 PRINTS Pathogenesis-related protein signature 68 79 IPR001938 -
Cone9ag1609 359 PRINTS Pathogenesis-related protein signature 81 110 IPR001938 -
Cone9ag1609 359 PANTHER OS03G0233200 PROTEIN 7 234 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cone9ag1609 359 MobiDBLite consensus disorder prediction 239 265 - -
Cone9ag1609 359 SUPERFAMILY Osmotin, thaumatin-like protein 19 235 IPR037176 -
Cone9ag1609 359 SMART tha2 21 234 IPR001938 -
Cone9ag1609 359 Gene3D Thaumatin 19 234 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1609 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1178 Cone-Chr10:8591174 Cone9ag1609 Cone-Chr9:11505533 2.23E-130 dispersed
Cone18ag0341 Cone-Chr18:1678750 Cone9ag1609 Cone-Chr9:11505533 5.96E-68 dispersed
Cone1ag0758 Cone-Chr1:51873058 Cone9ag1609 Cone-Chr9:11505533 1.05E-23 dispersed
Cone3ag1189 Cone-Chr3:30555498 Cone9ag1609 Cone-Chr9:11505533 1.13E-134 dispersed
Cone4ag1978 Cone-Chr4:13879218 Cone9ag1609 Cone-Chr9:11505533 2.03E-93 dispersed
Cone5ag0752 Cone-Chr5:3233350 Cone9ag1609 Cone-Chr9:11505533 6.81E-50 dispersed
Cone6ag0758 Cone-Chr6:3861870 Cone9ag1609 Cone-Chr9:11505533 9.00E-48 dispersed
Cone6ag1687 Cone-Chr6:12785740 Cone9ag1609 Cone-Chr9:11505533 7.82E-55 dispersed
Cone8ag0854 Cone-Chr8:8476467 Cone9ag1609 Cone-Chr9:11505533 2.92E-95 dispersed
Cone9ag1608 Cone-Chr9:11503598 Cone9ag1609 Cone-Chr9:11505533 9.95E-93 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116