Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1611 ATGGAAGAAACTTCAAATTTACCGCTTCCAGAGGCATTTCTTGATTTTCTGCAGGCCAATGGTGTAGATCCGTCCATTTATACTGCTACCACTTCTACTCCTCGTTACATAAGGTTGAAGGCTGATTGTGAAGCTGACATTGAAAAGATAGAGGCGGAGATCAAGTGCAAGATTGATAAAGTTAGTTGGCTTTCTGGTTTCTATTCTCTTCCGCCTGATATTCAGATCGCTGACTCCAGTGCTTACAAGGCAGGAAAGATATATGGAATAGATGCAGCTTCTGGAGCTGCTGTTTTAGCTTTGAATATTTCAGCTGATGACCATGTCCTTGATCTTTGTGCTGCTCCTGGTGCTAAACTTTGCATGATAGCAGACCTTCTGGGAGATTCTGGTTCTGTTACTGGAGTGGATGTTTCAAGACATCGTTTAGCAGCTTGTAGAACAATGCTACAGAAATATGCTCTCGGCAATTGTTGCCGGCTTTTTGTTGCTGATGGAACAACTTTCTCCCTCATCCCTGTGAGGGTTGATTTGGTTTCTAAATTATATAAATCAACAATGGAAGAAAAAGTAGACAGATTAAAGGAATGGACTTCTAGGAGACCTTGGAAGGAAAGGAATAGAGCTGCCAAAGCAAGAGAAAATTGCAGTGCCCAGTTGGTCCAGGGAAATCAACATCCAGAATTATTTTTTTATGGGAAGTGTTCTGGTATGATTGGGCTTAGTAGAAGCGAACTGTATCAAATTGCGTCTGATTGTGACATTTTGAACTACGGTTATGATAAGGTACTTGTAGATGCAGAGTGCACCCATGATGGCTCCATTAAACATATCCAAAAATTTGAGAATTGGGGTTGGAAGACTCTTCAGCGCCGTGTATTGGAAGCAGATAGAACTGATAACGTGACTATACTTCAGTTGAAACTCCTAAGCAATGGTTTTAGGCTGTTAAAAGCTGGGGGTTTACTTGTCTACAGCACTTGCAGTCTGACTGTTGCCCAGAATGAAGATGTAGTAGAGCAGTTTCTAAACCAAAATGCTTCAGCCGAGTTGCTGGAGATAGATGTTGCTGATAATTGGCCTTGCAAGAGTGGCCGTATACCAAAAACCTTACGCTTTGATCCTTTGACATCGCAGACTAGTGGGCTTTTTGTAGCTAAGTTCACAAAATCAACCACCACATAA 1185 41.69 MEETSNLPLPEAFLDFLQANGVDPSIYTATTSTPRYIRLKADCEADIEKIEAEIKCKIDKVSWLSGFYSLPPDIQIADSSAYKAGKIYGIDAASGAAVLALNISADDHVLDLCAAPGAKLCMIADLLGDSGSVTGVDVSRHRLAACRTMLQKYALGNCCRLFVADGTTFSLIPVRVDLVSKLYKSTMEEKVDRLKEWTSRRPWKERNRAAKARENCSAQLVQGNQHPELFFYGKCSGMIGLSRSELYQIASDCDILNYGYDKVLVDAECTHDGSIKHIQKFENWGWKTLQRRVLEADRTDNVTILQLKLLSNGFRLLKAGGLLVYSTCSLTVAQNEDVVEQFLNQNASAELLEIDVADNWPCKSGRIPKTLRFDPLTSQTSGLFVAKFTKSTTT 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11511901 11514595 - Conep09aG0166100.1 Cone9ag1611 445774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1611 394 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 281 300 IPR023269 -
Cone9ag1611 394 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 9 27 IPR023269 -
Cone9ag1611 394 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 135 152 IPR023269 -
Cone9ag1611 394 Coils Coil 40 60 - -
Cone9ag1611 394 Pfam 16S rRNA methyltransferase RsmB/F 99 170 IPR049560 -
Cone9ag1611 394 Pfam 16S rRNA methyltransferase RsmB/F 258 388 IPR049560 -
Cone9ag1611 394 Gene3D Vaccinia Virus protein VP39 6 390 IPR029063 -
Cone9ag1611 394 PRINTS RNA (C5-cytosine) methyltransferase signature 110 120 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone9ag1611 394 PRINTS RNA (C5-cytosine) methyltransferase signature 373 390 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone9ag1611 394 PRINTS RNA (C5-cytosine) methyltransferase signature 320 336 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone9ag1611 394 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 24 392 IPR023267 GO:0001510(PANTHER)|GO:0001510(InterPro)|GO:0008173(InterPro)
Cone9ag1611 394 CDD AdoMet_MTases 109 179 - -
Cone9ag1611 394 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 22 391 IPR001678 GO:0008168(InterPro)
Cone9ag1611 394 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 31 390 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1611 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0218 Cone-Chr8:1189571 Cone9ag1611 Cone-Chr9:11511901 5.25E-07 dispersed
Cone9ag0310 Cone-Chr9:1347806 Cone9ag1611 Cone-Chr9:11511901 5.80E-07 dispersed
Cone6ag1689 Cone-Chr6:12792450 Cone9ag1611 Cone-Chr9:11511901 5.45E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1126 . . . Bda10g00189 . . . . . . Cma03g00678 . Car03g00626 . Sed05g0671 . . Bhi03g00848 Tan03g2092 Cmetu04g1543 . Hepe04g1601 . . . . . . . . . . . Cone6ag1689 Cone9ag1611 Lsi01g00592 . . Cme08g00941 . Blo06g00294 . . Bpe10g00161 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03339 Chy02g00561 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014670 1 1 1 1 1 1 0 0 0 1 0 0 1 1 1 0 0 2 1 1 1 1 1 1 0 0 0 0 0 1 19