Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1613 ATGGTGCTCGAGGCGACGATGATATGTATCGACAACTCTGAATGGATGCGGAACGGTGATTATGCTCCTTCTAGATTTCAAGCTCAAGCGGATGCTGTCAATCTCATTTGTGGAGCTAAGACTCAGTCTAATCCGGAGAATACAGTGGGAGTTCTAACAATGGCAGGCAAAGGAGTTCGTGTTTTGGTCACTCCTACCACTGATCTTGGCAAGATTCTGGCGTGCATGCATGGTTTGGAGATAGGCGGTGAGATGAACCTGGCAGCTAGCATCCAGGTGGCTCAATTGGCTCTCAAGCATCGTCAGAATAAAAAGCAGCAGCAGAGAATTATTGTCTTTGTCGGAAGTCCTGTCAAACACGAGAAAAAGATATTGGAAATGATTGGAAGGAAGCTAAAGAAGAACAATGTAGCCCTTGATATTGTTGATTTTGGTGAAGAGGACGATGGAAAACCAGAAAAGCTAGAAGCACTCCTAGCGGCTGTCAACAACAATGACACCAGCCACATTGTCCATGTTCCAGCTGGTCCATCTGCTCTTTCTGATACACTGATCAGTACTCCCATCTTCACTGGAGATGGAGAGGGAGGAAGTGGCTTTGCAGCGGCGGCAGCAGCAGCTGCAGCTGGTGGTGTTTCTGGTTATGATTTTGGTGTAGATCCCAACATAGATCCCGAACTTGCCCTTGCTCTTAGAGTTTCTATGGAAGAGGAAAGGGCCAGGCAAGAGGCTGCTGCTAAAAAGGCTGCAGAGGAGGCTTCGAAGCAGGAAAAAGGAGAGCAGCCATCTGGCTCACAAGATGCCACAATGACAGAACATGCCATTCCTGCCGACAATAAGGCTATTGATTCAATTGAGGATGAAAATGCTCTGCTACAGCAGGCCCTTGCAATGTCAATGAATGATCCAGCTTCAAGCAATGAGTTGCGAGACACAGATATGTCAGATGCACCTGCAGATGATCCAGATTTGGCGCTTGCTCTTCAGATGTCCGTACAGGAAGGTGAAAAAGATTCTGCAAGCCAGACAGATATGAGCAAGTTATTAGCAGACCAGTCATTCGTTTCTTCAATCCTTTCCTCACTTCCTGGGGTCGATCCAAATGATCCTTCAGTTAAAGATTTACTGGCTTCTATGCATGGCCAGTCAGAGGAGAAGAAAAATGAAGAAGCGCCAAAGGAAGATGAAAAGAAATGA 1197 46.53 MVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEMNLAASIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKILEMIGRKLKKNNVALDIVDFGEEDDGKPEKLEALLAAVNNNDTSHIVHVPAGPSALSDTLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYDFGVDPNIDPELALALRVSMEEERARQEAAAKKAAEEASKQEKGEQPSGSQDATMTEHAIPADNKAIDSIEDENALLQQALAMSMNDPASSNELRDTDMSDAPADDPDLALALQMSVQEGEKDSASQTDMSKLLADQSFVSSILSSLPGVDPNDPSVKDLLASMHGQSEEKKNEEAPKEDEKK 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11522602 11525886 + Conep09aG0166300.1 Cone9ag1613 445776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1613 398 Pfam Ubiquitin interaction motif 320 334 IPR003903 -
Cone9ag1613 398 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Cone9ag1613 398 Pfam Ubiquitin interaction motif 287 300 IPR003903 -
Cone9ag1613 398 MobiDBLite consensus disorder prediction 241 258 - -
Cone9ag1613 398 CDD PSMD4_RAZUL 340 387 IPR049590 -
Cone9ag1613 398 SMART uim 287 306 IPR003903 -
Cone9ag1613 398 SMART uim 222 241 IPR003903 -
Cone9ag1613 398 SMART uim 319 338 IPR003903 -
Cone9ag1613 398 MobiDBLite consensus disorder prediction 301 323 - -
Cone9ag1613 398 SUPERFAMILY vWA-like 4 178 IPR036465 -
Cone9ag1613 398 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Cone9ag1613 398 CDD VWA_26S_proteasome_subunit 1 188 - -
Cone9ag1613 398 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Cone9ag1613 398 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Cone9ag1613 398 MobiDBLite consensus disorder prediction 379 398 - -
Cone9ag1613 398 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Cone9ag1613 398 MobiDBLite consensus disorder prediction 241 269 - -
Cone9ag1613 398 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Cone9ag1613 398 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 287 306 IPR003903 -
Cone9ag1613 398 SMART VWA_4 2 175 IPR002035 -
Cone9ag1613 398 Gene3D - 220 305 - -
Cone9ag1613 398 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 396 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008540(PANTHER)|GO:0031593(PANTHER)|GO:0043161(PANTHER)
Cone9ag1613 398 Coils Coil 232 252 - -
Cone9ag1613 398 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 319 338 IPR003903 -
Cone9ag1613 398 FunFam 26S proteasome regulatory subunit N10 220 301 - -
Cone9ag1613 398 MobiDBLite consensus disorder prediction 359 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1613 K03029 - - csv:101221273 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1691 Cone-Chr6:12795533 Cone9ag1613 Cone-Chr9:11522602 2.54E-231 wgd
Cone8ag0856 Cone-Chr8:8490009 Cone9ag1613 Cone-Chr9:11522602 2.57E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58