Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1616 ATGTCACAACAGGAATTGTGGAATGGTCCGCCTGGTTTCAGACCCTCGAAATCTGCCCCTTCATCTCCAGCCAAGCCTCTCGGAGTTTGCAGAACTCGTTCCGAGTCCTTCCATATCACCCATAAAGTCCCAATGGGTGACACTCCTTATGTTCGAGCCAAAAATGTCCAGTTGGTTGATAAGGATCCTGGAAAAGCAATTCCGCTGTTTTGGGCTGCCATTAATGCGGGAGATAGAGTTGATAGTGCGTTAAAGGACATGGCAATTGTCATGAAGCAACAGAACAGGGCTGAAGAAGCTATTGAAGCAATCAAATCGCTGCGAAATCGATGTTCCGATCAAGCCCAGGAATCGCTCGATAATATTCTTCTTGACCTTTACAAGAGGTGTGGAAGGCTGGATGACCAAGTCACGCTTTTGAAGCACAAACTGTTCTTGATCCAACAAGGTTTGGCATTCAATGGGAAGCGTACTAAAACTGCTCGATCTCAAGGGAAGAAATTTCAGGTCTCTGTGGAACAAGAAGCCACTAGATTACTGGGCAATTTGGGATGGGCATTGATGCAGCAGAACAACTATATTGAAGCGGAAGATGCTTATCGCCGGGCACTTACAATTGCACCCGATAATAACAAAATGTGCAACCTGGGAATCTGCCTGATGAAACAGGGCAGGATTTCTGAAGCTAAAGAGACTCTGCGCCAAGTAAAGCCCGCAGTTGCAGATGGGCCTAGAGGCACAGACTCACACCTCAAGGCTTATGAAAGGGCTCAACATATGCTGAAAGATCTCGAGTCTGAGATGATGAATAGAGGAGGGGACAGGCTCGAGCAGAGTAGACTTTTTGATGCTTTTCTGGGTTCATCCTCAATTTGGCAACCTCAACCTTGCAAGGACCATACAACAACAAGCTTGCCTTCTACTAATACAAATCTTCCCAAACCCCCCATTCAAGATGATTTTGCTGATGAGAATATTGATCTGGTACCAACAGTAAATCAGATGATTATTCCACAACAGAAATTTCTGAAGCAACTTCCTCCTCCTCATGGGAATTCACTAAACTTTGCCGCACCACCATTTTACGCATCAAAACTGGTTACTAATGATTCGACTGTTCGAGCCCCATTAGGCAACCAATTTCCAGAAGGGCTTAAGAGAACAAGGTCTGGAAATCCAGTTCACATGGGAGAAAAGATGAAGCCGCTCATGGAATTGACGAAGCCTGAAAAGAAGACAGTAACTAGTCTTTCTTCGGGTAAAGCTGCTGGAGAAGAAAGAGGTGGAGACAAGTTTATAGAATTTTTGCCTCATGAAGATGACTTTGAAGAGGCAATTCTCGCAGCCGTTTTGGGATCATCAATGGATGGAGCGAGGAAGGAAGCCATTGACAATGGCAATGCTTCTGGCATCATCTTTGAAAGGAAGATAGAGAAGAGGCTCAAGGTTTTTCAAGATATTACACTTTCCTTGAGTCCTAGAGCATGA 1488 44.89 MSQQELWNGPPGFRPSKSAPSSPAKPLGVCRTRSESFHITHKVPMGDTPYVRAKNVQLVDKDPGKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRNRCSDQAQESLDNILLDLYKRCGRLDDQVTLLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALTIAPDNNKMCNLGICLMKQGRISEAKETLRQVKPAVADGPRGTDSHLKAYERAQHMLKDLESEMMNRGGDRLEQSRLFDAFLGSSSIWQPQPCKDHTTTSLPSTNTNLPKPPIQDDFADENIDLVPTVNQMIIPQQKFLKQLPPPHGNSLNFAAPPFYASKLVTNDSTVRAPLGNQFPEGLKRTRSGNPVHMGEKMKPLMELTKPEKKTVTSLSSGKAAGEERGGDKFIEFLPHEDDFEEAILAAVLGSSMDGARKEAIDNGNASGIIFERKIEKRLKVFQDITLSLSPRA 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11538146 11539920 + Conep09aG0166600.1 Cone9ag1616 445779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1616 495 MobiDBLite consensus disorder prediction 293 312 - -
Cone9ag1616 495 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515(InterPro)
Cone9ag1616 495 SUPERFAMILY TPR-like 58 281 IPR011990 GO:0005515(InterPro)
Cone9ag1616 495 PANTHER PROTEIN POLLENLESS 3-LIKE 2 22 489 IPR044961 -
Cone9ag1616 495 MobiDBLite consensus disorder prediction 1 29 - -
Cone9ag1616 495 Gene3D Tetratricopeptide repeat domain 56 244 IPR011990 GO:0005515(InterPro)
Cone9ag1616 495 SMART tpr_5 177 210 IPR019734 GO:0005515(InterPro)
Cone9ag1616 495 Coils Coil 90 117 - -
Cone9ag1616 495 MobiDBLite consensus disorder prediction 378 397 - -
Cone9ag1616 495 Pfam Tetratricopeptide repeat 187 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1616 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0216 Cone-Chr14:1007646 Cone9ag1616 Cone-Chr9:11538146 7.39E-87 dispersed
Cone6ag1198 Cone-Chr6:9290021 Cone9ag1616 Cone-Chr9:11538146 6.04E-86 dispersed
Cone7ag0377 Cone-Chr7:1652857 Cone9ag1616 Cone-Chr9:11538146 3.64E-89 dispersed
Cone9ag1174 Cone-Chr9:8367937 Cone9ag1616 Cone-Chr9:11538146 1.72E-81 dispersed
Cone6ag1692 Cone-Chr6:12802073 Cone9ag1616 Cone-Chr9:11538146 1.01e-311 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1142 . . . Bda10g00191 . . . . . . . Cma07g00415 . Car07g00364 Sed14g1204 . Cpe10g00675 Bhi03g00842 Tan03g2099 Cmetu04g2642 . Hepe04g1607 . . . . . . . . . . . . Cone9ag1616 . . . Cme08g00947 . . . . Bpe10g00163 . . . . . Cmo07g00412 . . . . . . . . . . . . . . . . . . . . . Csa06g03345 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38