Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1619 ATGTCTTCTCCAACGAGCCCCTTCTCGCTCAGAGCTCTGTCCTCCAACCCCACCGCCAAATGTTCCTTCCCCAAGCCTAGCGTTGCCGATTTCCGTGTTGGGGTTCACCCTCCTCCTAACTCGGTCTCTCTTCGTTCTTCCTTCGCTTCTTCCGGCTCGATCGAGCTGAGTCGCGCTGGTGTTTCTGTGGTGAATACGACGCCGCTGAGGACCAGGATATGTGCCAGTTCTGCACAGGTTATGGATCAGTCGCTAAGTCTAAAGGAGTCTAAGGCCCCCACGATTGTTGACGTGGATTTGGGGTCCCGAAGCTATCCGATTTATATCGGATCCGGTCTCCTTGATCAACCTGAACTTCTTCAGAGGCATGTTCATGGGAAGAGAGTTCTTGTGGTTACTAATACCACCGTTGCGCCGTTATATGAGGATAAAGTCGTTGATGCTTTGACAAAGGGTAACCCGAACGTTTCGGTCGAAAGTGTGATTTTACCGGATGGAGAGAAATACAAGGACATGGATAATCTTATGAAAGTATTTGACAAGGCCATTGAGTCTCGACTGGACCGCCGATGCACTTTTGTTGCCCTTGGAGGTGGTGTGATTGGTGACATGTGTGGTTATGCTGCTGCTTCTTTCCTCCGTGGTGTTAATTTTATCCAGATTCCTACAACTGTTATGGCACAGGTGGACTCGTCTGTTGGAGGCAAAACAGGGATTAATCACCGTCTTGGGAAGAATTTGATTGGTGCCTTTTACCAACCACAATGTGTACTCATAGACACAGACACATTAAATACACTTCCAGAAAGAGAATTAGCATCAGGGTTTGCAGAAGTCATAAAATATGGTCTCATTCGGGATGCAGAATTTTTCGAGTGGCAGGAGAAGAATATACCAGCATTAATGGCCAGGGATCCAAATGCATTGGCATATGCAATAAAACGTTCATGTGAAAACAAGGCGGAGGTTGTGTCTCTAGATGAGAAAGAAAGTGGAGTAAGAGCAACATTGAACTTGGGTCATACATTTGGACATGCAATTGAAAATGGGTTAGGGTACGGAGAGTGGCTCCATGGAGAAGCTGTTGCAGCCGGCATGGTCATGGCTGTGGATATGTCATACCGTCTTGGTTGGATAGATGATTCACTTGTGAAGCGAGTTCAGAAGATTCTAGACCAGGCTAAATTACCTACTACCCCTCCAGAAGTAATGACTGTGGAGACGTTCAAGTCTGTCATGGCGGTTGATAAGAAGGTTGCAGACGGGCTCTTGAGGCTTATTCTATTGAAAGGACCCTTAGGGAACTGTGTTTTCACTGGTGATTATGATAGAAAAGCCCTAGACGAAACACTCCATGCATTTTCCAAATCCTGA 1374 46.65 MSSPTSPFSLRALSSNPTAKCSFPKPSVADFRVGVHPPPNSVSLRSSFASSGSIELSRAGVSVVNTTPLRTRICASSAQVMDQSLSLKESKAPTIVDVDLGSRSYPIYIGSGLLDQPELLQRHVHGKRVLVVTNTTVAPLYEDKVVDALTKGNPNVSVESVILPDGEKYKDMDNLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPERELASGFAEVIKYGLIRDAEFFEWQEKNIPALMARDPNALAYAIKRSCENKAEVVSLDEKESGVRATLNLGHTFGHAIENGLGYGEWLHGEAVAAGMVMAVDMSYRLGWIDDSLVKRVQKILDQAKLPTTPPEVMTVETFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFSKS 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11547438 11551323 + Conep09aG0166900.1 Cone9ag1619 445782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1619 457 CDD DHQS 104 451 - -
Cone9ag1619 457 PANTHER 3-DEHYDROQUINATE SYNTHASE 93 452 IPR050071 GO:0003856(PANTHER)|GO:0009073(PANTHER)
Cone9ag1619 457 Pfam 3-dehydroquinate synthase 161 419 IPR030960 -
Cone9ag1619 457 FunFam 3-dehydroquinate synthase 267 456 - -
Cone9ag1619 457 NCBIfam 3-dehydroquinate synthase 105 448 IPR016037 GO:0003856(InterPro)|GO:0005737(InterPro)|GO:0009073(InterPro)
Cone9ag1619 457 Hamap 3-dehydroquinate synthase [aroB]. 93 455 IPR016037 GO:0003856(InterPro)|GO:0005737(InterPro)|GO:0009073(InterPro)
Cone9ag1619 457 Gene3D - 80 266 - -
Cone9ag1619 457 Gene3D - 267 457 - -
Cone9ag1619 457 FunFam 3-dehydroquinate synthase 93 266 - -
Cone9ag1619 457 SUPERFAMILY Dehydroquinate synthase-like 98 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1619 K01735 - - vvi:100266137 697.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1695 Cone-Chr6:12809812 Cone9ag1619 Cone-Chr9:11547438 3.49E-304 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1153 . . . . Bpe15g00482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1695 Cone9ag1619 . . . . . . . Bda14g01069 . . . . . . . Cma16g01246 . . . . . . . . . . . . . . . . . . . Lsi07g01091 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009618 1 0 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31