Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1631 ATGAACATCAGTAGCCTTTATGCACTCGCACCAAATGAAGGTTCACCAGAATGGAATAATAAGGCAGACAATGGTTGGCAGCTTACAGCCACCTCCATGGTTGGCCTCCAGAGCGTTCCCGGCCTTGTCATCCTCTATGGAAGCATGGTTAAGAAAAAATGGGCCGTCAACTCAGCCTTCATGGCCCTTTACGCCTTTGCTGCAGTGCTGCTGTGCTGGGTCCTATGGGGCCATCAAATGGCATTCGGAAAAAAGATGATCCTACTTGTGGGGCAGCCTGATATCGCTCTAACCCCCAAGTATTTGCTTCCGAAATCACCATTGGGCTATGTCCCCATGGCTGACTATGTGTTCTTCCAATTTGCGTTTGCTGCCATTACTGTCATATTGCTCGCTGGATCTTTGCTTGGGAGGATGAACTTTTATGCCTGGATGTTGTTTGTTCCTCTCTGGCTCACTTTCTCTTACACGGTTGGGGCCTTCACTATCTGGGGCAACGGTTTTATCGAGAAGTACATTATTGATTATGCTGGTGGTTATGTCATTCATCTTTCTTCTGGAATAGCTGGCTTCACTGCTGCTTACTGGGTGGGGCCAAGACACCCGCACGACAGGCAATGCTTCCCGCCGAACAACATCATTCACATGGTGGGAGGTGCAGGGTTTCTATGGCTAGGGTGGACAGGTTTCAACGGTGGAACGCCATTCGCAGCCGGTCTGGTTACATCCCTAGCCATTCTCAACACACATGTTTGCACTGCAACCAGCCTTTTAGTCTGGGTTTCTATGGACATGGTGGTGTATAAGAAGAGCTCAGTCATTGGTGCAGTCCAGGGGATGATAACTGGCCTCGTCTGTATCACCCCTGCTGCAGGTATTGTGGATCCCTGGGCTGCAACGTTGATGGGAGTGCTCTCAGGTGTAGTACCCTGGTACACCATGATGGTTCTGCATAGAAAGTGGGTCTTGTTCCAGAGTGTAGATGACACGCTGGGTGTCTTCCACACACATGCTGTGGCTGGAGCAATGGGGGGTCTACTCGCTGGCATCTTTGCCAAACCAAACCTTCTCCGTCTCATGTATTCAGATCAGTATGATTACGGGCCAGGCTTAATATATGCCATATTCGATGGAAAACTGAAAGCTGGGATTAGACAAGTGGGCTACCAGTCGGCTGGAGCAGTTTTTATTACTATATGGAATGTAGTTGTGACCAGCGTCATCTGTATTCTGATCAGCCGAATTACTGATCTGCGGATGAAGGACGAAGACATTGAGATTGGGGATGATGCAGCTCATGGAGAAGAGGCTTACGCTCTCTGGGGAGATGGGGAGAGCACCGGTACCTCTGTACGTTTGCACACCCCTAAACTTCCTTCCATCTGCCAATGCGGTTAA 1398 49.57 MNISSLYALAPNEGSPEWNNKADNGWQLTATSMVGLQSVPGLVILYGSMVKKKWAVNSAFMALYAFAAVLLCWVLWGHQMAFGKKMILLVGQPDIALTPKYLLPKSPLGYVPMADYVFFQFAFAAITVILLAGSLLGRMNFYAWMLFVPLWLTFSYTVGAFTIWGNGFIEKYIIDYAGGYVIHLSSGIAGFTAAYWVGPRHPHDRQCFPPNNIIHMVGGAGFLWLGWTGFNGGTPFAAGLVTSLAILNTHVCTATSLLVWVSMDMVVYKKSSVIGAVQGMITGLVCITPAAGIVDPWAATLMGVLSGVVPWYTMMVLHRKWVLFQSVDDTLGVFHTHAVAGAMGGLLAGIFAKPNLLRLMYSDQYDYGPGLIYAIFDGKLKAGIRQVGYQSAGAVFITIWNVVVTSVICILISRITDLRMKDEDIEIGDDAAHGEEAYALWGDGESTGTSVRLHTPKLPSICQCG 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11611072 11612575 + Conep09aG0168100.1 Cone9ag1631 445794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1631 465 Gene3D Ammonium transporter AmtB like domains 8 441 IPR029020 -
Cone9ag1631 465 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886(InterPro)
Cone9ag1631 465 PRINTS Rhesus blood group protein signature 120 136 IPR002229 GO:0005886(InterPro)
Cone9ag1631 465 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886(InterPro)
Cone9ag1631 465 PANTHER AMMONIUM TRANSPORTER MEP2 17 447 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cone9ag1631 465 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone9ag1631 465 Pfam Ammonium Transporter Family 26 438 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone9ag1631 465 SUPERFAMILY Ammonium transporter 18 419 - -
Cone9ag1631 465 NCBIfam ammonium transporter 23 438 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0827 Cone-Chr20:5877042 Cone9ag1631 Cone-Chr9:11611072 7.35E-210 dispersed
Cone6ag1224 Cone-Chr6:9645627 Cone9ag1631 Cone-Chr9:11611072 1.50E-21 dispersed
Cone6ag1225 Cone-Chr6:9646996 Cone9ag1631 Cone-Chr9:11611072 1.81E-20 dispersed
Cone9ag1631 Cone-Chr9:11611072 Cone9ag1205 Cone-Chr9:8692128 3.28E-193 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1631 K03320 - csv:101218977 734.947