Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1632 ATGGACCACAACATCTACCTCCATGGTGATCTCGACCTCAAAATCATCGGGGCCCGTAAGCTTCCTAACATGGATCTCGTCTCCGAGCATTTCCGCCGCTGCTTCACTGGCTGCGGTGCTTTCACTTCCCATTCTACTAAACCTGCTCCCTCTCGGTCCGCCACCGACCACAAACTCCACCACCCTCCTAAGATTATCACCAGCGATCCCTATGTCACCGTCTCTGTCCCCCAAGCCACCGTAGCTCGCACGCGCGTCATAAAAAACTCCCAGAATCCTGTCTGGAACGAGCACTTCGTCATCCCCCTCGCCCACCCCCTCACTCATCTGGAGTTTGTCGTTAAAGATGATGACATTTTCGGCGCCCAACCCATTGGTTCTGTCAAAATTCCTGCACCCCAATTGCTGTCTGGCGAACTCATAAGCGATTGGTTTCCTTTGATTGCCTCTAACGGAAAACCCCCCAAGCCAGATACAGCTCTCCATCTTGAAATGAAGTTCACGTCGGTTCATAATCATCCGGTTTATCAGCACGGTATTGCGGCCGATCCGGAGAAGAAGGGTGTCAGCCACACCTACTTTCCCCTGAGGAAAGGAACCTCTCTGAGACTCTACCAAGATGCTCATGTCCTTGATGGAATGCTGCCCGAGATTGAATTGGACGAAGGTAAGGTTTTTCATCCTGGTAAATGTTGGGAGGACATCTGTTATGCTATCTCCGAGGCTCATCATATGGTTTATATGGTGGGCTGGTCAATTTATCACAAAGTGAAGCTGATTAGGGAGCCTACCCGGCCTTTGCCACGAGGTGGAGATTTGACTCTTGGTGAATTGCTCAAGTACAAATCAGAAGAGGGGGTGCGAGTTCTGTTGTTGGTTTGGGATGATAAGACTTCCCATGATAAATTCTTCATCAATACAGTAGGAGTAATGCAGACACATGATGAAGAAACCCGAAAATTTTTCAAACATTCTTCTGTTATTTGTGTGCTAGCTCCTCGCTATGCTAGCAGTAAGCTTAGCTACATCAAGCAAACGGTTGTTGGGACTCTTTTCACGCACCATCAAAAATGTGTTCTTGTAGACACACAGGCACAAGGAAATTATCGAAAGATAACTGCATTTCTTGGAGGTCTTGACCTGTGTGATGGCCGTTATGACACAACCGAACATCGCCTATTTCGAGATCTCAACACTGTATTTGAGAATGATTATCATAATCCTACATTTCCTTCTGGAACCAAGGCTCCGAGGCAACCATGGCATGACCTGCACTGTCGAATTGATGGGCCGGCTGCATATGATGTTCTCATAAACTTTGAGCAGCGTTGGAGGAAAGCAAGGAGATGGACAGAGTTTGGTTTAAGAGTTAAAAGGATTTCTAATTGGAATGATGATGCTTTACTCAAAATAGGGCGCATCTCATGGATTCTAAGTCCTGCACTATCTACTCTAGAGGATGGTACCACATGTGTTCCAGATGATGACCCCAGAGTATGGGTTTCTAGAGAAGAAGACCATGAAAACTGGCATGCTCAGATTTTTCGATCCATTGACAATGGGTCGGTTAAAGGATTTCCCAAAGACGTCCGTAGAGCCGAATCCCAGAACCTTATATGTGCCAAAGATTTGGTTGTAGACAAAAGCATTCAAACAGGATATATCCAGGCCATCAGATCTGCTCAACATTTTATATATATCGAAAATCAGTACTTTATTGGATCATCATATGCATGGCCGTCATATCAAAATGCAGGAGCTGATAATCTAATTCCTATGGAGCTGGCACTGAAGATCGCTAGCAAGATCCGAGCTAAGGAGAGATTTGCTGTGTATGTTATCATACCAATGTGGCCTGAGGGAGATCCAAATGGTGCTGCTGTGCAAGAAATCCTCTTTTGGCAGGGACAGACAATGCAAATGATGTATGATGTAGTTGCACGGGAACTAAAGTCCACAAATCAATCAGACTTGCATCCTCAAGATTACCTCAATTTCTACTGCCTTGGAAACCGTGAAAGATGTCCTGAGGGAGTGTCAACTGCTGGTGGTACCCCGATTTCTGGTGCACAAAAGTTTCAGAGGTTTATGATATATGTGCATGCCAAGGGAATGATAGTAGACGATGAATATGTAATAATTGGATCTGCCAATATTAACCAAAGATCCCTGGCGGGAACAAAGGACACTGAGATAGCAATGGGTGCATATCAGCCGCATCATACTTGGTCTGGAAGGAAGAAACACCCACGCGGTCAGATATATGGGTACAGAAGGTCGCTATGGAGCGAGCATCTTGGGTATTCAGATCCCATCTTCAAAGAAGCAGAGAGTTTGGAATGTCTTAGAAAAGTGAATGACATTGCGGAAGAGAACTGGAAGCGATTCACAGCTGACGAGTTCACGGAATTGCAGGGTCATCTTCTCATGTATCCTGTGGAGATAGATTACGAAGGGAGAGTGGGGCCCAAACCTGGATACGAAAACTTCCCAGATGTTGGGGGTAAAGTCCGGGCTGATTTAGAACAATGGTTGGGATTGAATAAGAGTCAATCCCAATCCAACCCGGTCGGTGCCGTTTTCCTCCTTCAAAGACTACAAACTATCGATTCCGCGTCCGGGCCAGCTGCAGCTCATTTCCAAGCCCTAAAACCATCGATCCTCTTCCTTGATTGCTCTTCTTCCACCTTTGTCACGCCTTTTTCTGCAAATGGCACGCTCCTCTTTCTACCCTTTAATTTGATAGTTCCTTTTTAA 2757 45.92 MDHNIYLHGDLDLKIIGARKLPNMDLVSEHFRRCFTGCGAFTSHSTKPAPSRSATDHKLHHPPKIITSDPYVTVSVPQATVARTRVIKNSQNPVWNEHFVIPLAHPLTHLEFVVKDDDIFGAQPIGSVKIPAPQLLSGELISDWFPLIASNGKPPKPDTALHLEMKFTSVHNHPVYQHGIAADPEKKGVSHTYFPLRKGTSLRLYQDAHVLDGMLPEIELDEGKVFHPGKCWEDICYAISEAHHMVYMVGWSIYHKVKLIREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKFFINTVGVMQTHDEETRKFFKHSSVICVLAPRYASSKLSYIKQTVVGTLFTHHQKCVLVDTQAQGNYRKITAFLGGLDLCDGRYDTTEHRLFRDLNTVFENDYHNPTFPSGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKARRWTEFGLRVKRISNWNDDALLKIGRISWILSPALSTLEDGTTCVPDDDPRVWVSREEDHENWHAQIFRSIDNGSVKGFPKDVRRAESQNLICAKDLVVDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYQNAGADNLIPMELALKIASKIRAKERFAVYVIIPMWPEGDPNGAAVQEILFWQGQTMQMMYDVVARELKSTNQSDLHPQDYLNFYCLGNRERCPEGVSTAGGTPISGAQKFQRFMIYVHAKGMIVDDEYVIIGSANINQRSLAGTKDTEIAMGAYQPHHTWSGRKKHPRGQIYGYRRSLWSEHLGYSDPIFKEAESLECLRKVNDIAEENWKRFTADEFTELQGHLLMYPVEIDYEGRVGPKPGYENFPDVGGKVRADLEQWLGLNKSQSQSNPVGAVFLLQRLQTIDSASGPAAAHFQALKPSILFLDCSSSTFVTPFSANGTLLFLPFNLIVPF 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11614724 11620658 - Conep09aG0168200.1 Cone9ag1632 445795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1632 918 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Cone9ag1632 918 Pfam Phospholipase D Active site motif 698 723 IPR001736 GO:0003824(InterPro)
Cone9ag1632 918 PIRSF PLD_plant 1 848 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cone9ag1632 918 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824(InterPro)
Cone9ag1632 918 SMART C2_3c 10 144 IPR000008 -
Cone9ag1632 918 SUPERFAMILY Phospholipase D/nuclease 191 451 - -
Cone9ag1632 918 Pfam Phospholipase D C terminal 772 837 IPR024632 -
Cone9ag1632 918 FunFam Phospholipase D delta 222 466 - -
Cone9ag1632 918 PANTHER PHOSPHOLIPASE D 6 840 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cone9ag1632 918 SUPERFAMILY Phospholipase D/nuclease 547 780 - -
Cone9ag1632 918 Gene3D Endonuclease Chain A 523 742 - -
Cone9ag1632 918 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824(InterPro)
Cone9ag1632 918 Gene3D C2 domain 8 177 IPR035892 -
Cone9ag1632 918 CDD C2_plant_PLD 4 168 - -
Cone9ag1632 918 Gene3D Endonuclease Chain A 224 462 - -
Cone9ag1632 918 SMART pld_4 350 385 IPR001736 GO:0003824(InterPro)
Cone9ag1632 918 SMART pld_4 696 723 IPR001736 GO:0003824(InterPro)
Cone9ag1632 918 Pfam C2 domain 58 147 IPR000008 -
Cone9ag1632 918 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 169 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0798 Cone-Chr10:4048817 Cone9ag1632 Cone-Chr9:11614724 3.28E-38 dispersed
Cone14ag0747 Cone-Chr14:4169913 Cone9ag1632 Cone-Chr9:11614724 3.88E-33 dispersed
Cone20ag1192 Cone-Chr20:7989422 Cone9ag1632 Cone-Chr9:11614724 1.45E-230 dispersed
Cone2ag0364 Cone-Chr2:1923354 Cone9ag1632 Cone-Chr9:11614724 3.77E-231 dispersed
Cone3ag0820 Cone-Chr3:4208748 Cone9ag1632 Cone-Chr9:11614724 3.67E-36 dispersed
Cone7ag0634 Cone-Chr7:3222065 Cone9ag1632 Cone-Chr9:11614724 7.64E-225 dispersed
Cone17ag1431 Cone-Chr17:9772248 Cone9ag1632 Cone-Chr9:11614724 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1632 K01115 - csv:101217251 1334.32