Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00002 ATGGGTCTTCATAGCTTCTTCTTAATCCTTCTTCCCGTCTCTTTCTTCTTCCAATTCCGCCTCTCCCTTTCCCAGAACCCCACAATTTGCCATTCCGATGATTTCAAGGCCTTGCAGGACTTCCACAGCGCGTTTGATTCCCAAATCGACGGATGGCACACCGGCTGTTCGACGAATTGCTGCAGTTGTATTGGCCTCACTTGTGACTCTTCTGGACGGGTTGTGAAGATGGAGCTTGGTGGTAGGAAGATCAAGGGTCAGTTACCTTACTCGATTGCGAGATTGGAACACCTCAGAGTTCTCAATCTGTCTTCTAATTCTCTCAATGGGTCCATTCCCTTGGCTCTGTTTCATCTACCATACTTGGAAGTTCTTGATCTCAGTTTCAACGATTTGGTTGGGAGCATCTCATCAGGTACCATTAATTTGCCTTCCATCCGGCTTCTTAACGTTTCTCATAATAACTTTAATGGAAGTCTTCCACTTGGGGTTTGTGTTAACTCCTCTAGAATCGAGATTCTGAATCTGGGTTTCAATCGTTTCACTGGCATGTTTCCTGTTGAGCTTGCTGAATGTGTTTCCTTGAAGAGACTGTTTGTGGAATCGAATTTACTCAGTGGTGGGATACCTGATGAGGCTTCTGGATTGAGGAAATTGACACATTTTTGTGTTCAGAATAACAAGCTTTCTGGTTCTTTGAATGGTGTTGTTGGGAATCTCACAAACCTTGTTCGATTGGATTTGTCATCTAATGGGTTTTTCGGCGAAATTCCAGATGTTTTTTATAACTCTGTGAATTTGAGTTATTTTGCTACCGAATCTAATAGGTTTAGCGGAAAGATTCCCAATTCTTTGTCAAACTCTGCTTCACTCACTGTCCTAAATTTGAGGAACAATTCAATACAGGGAACTCTTGATCTCAACTGTTCAGCAATGAAAAGCCTGGTTACACTTGATTTAGGCACTAATAGGTTTCATGGCTCTATACCAAGTAATCTTCCCTCTTGTACTCAACTGAGAAGTATAAACCTTGCTAGGAACAACCTTGGCGGTCAGATCCCCGAAAGCTTTAGGAATTTTCAGAGCCTCTCGTATTTATCACTTACGAATACGAGCATTGTTAATGTTTCGTCTGCTCTTAACATCTTGCAACATTGCAAGAATTTGAGTACAATGGTCCTTACCTTTAATTTTCGTGGTGAAGTGTTGGAAGATGATCCTAACTTGCATTTCAAGAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATCATACCCCAGTGGTTGAGAGGTTCTAGGAAGCTGCAGTTGTTGGATTTGTCGTGGAACCGTCTTGGAGGAACTATTCCACCCTGGTTCAGCGAGTTGCAGTCCTTGTTTTACTTGGATTTATCTAATAATTCATTCACTGGATATATCCCTAAAGAGATGACTATAATGAGGAGTTTCATTGACAGAAAATTCTCGCCCGATGAACCTTCCTCACTAGATTTTTCCCTTTTTGTGACAAGAAATGGAACTGGATTGCAGTACAATCAAGTATGGAGGTTTCCACCCACTTTGAATCTCAGTCTCAACAATCTCAGTGGGCCAATCTCGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATCTGAAAATCAACAGCCTTTCGGGATCGATTCCGAGCAGCCTTTCGGGGATGGTTAGCTTAGAGACTCTGGATCTTTCTCACAACAATCTTTCAGGAATAATTCCTCCTTCACTGCAAAATCTCAATTTTTTGTCTAAGTTCAGTGTTGCATACAATCATTTACATGGGGCAATTCCTGAAGGAGGTCAGTTTCATAGCTTTGATAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCGAGACCGTATATGTACGTCAATTGATCCTCTCGTGCCATCCCACAAATCAAGAATGGATATAGGGAGTATTGTAGGTATTGTTATCGGTATTGTGTTCGGGATCATGTTTCTTATAACTCTTATGGTTGTGTTTATGCTTCGGGCTCCTCGGGGAAGAGTTGGAGATCCCGAAAATGAAGTGTCTAATACTGATGATAAAGACTTGGAGGAAGGCAGGTCAGGATTGGTAGTTCTGTTCCAAAACAATAACAATGGAAGCCTCTCGCTGGAGGACATTTTGAAATGGACAAATGATTTTGATCAAGAAAACATCATAGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCAACCCTTCCTGACGGCAGAAAGGTTGCCATAAAACGGCTATCTGGTGATTGTGGTCAAATGGACAGAGAATTTCGGGCGGAAATCGAAACGCTTTCTGGTGCTCAGCATCAGAATCTTGTTCTTCTTCTAGGGTATTGTTTGTATAAAAATGACAGGCTTCTGATTTACTCTTTCATGGAGAACGGTAGCTTAGATTACTGGTTACATGAAAAACTTGATGGTCCGTCTTGCCTTAATTGGGATACCAGACTGCAGATTGCTCGGGGGGCAGCTGCAGGGCTGGCTTATTTGCATCAATCCTGTGAACCTCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACAAAAACTTCAAAGCTCACTTAGCCGATTTTGGTCTTGCCAGGCTCATTCTTCCCTATGATTCCCACGTCACGACCGATCTTGTTGGTACACTGGGCTACATTCCACCAGAGTACGGGCAATCCTCGGTGGCAACTTACAAAGGGGACGTGTATAGTTTTGGAGTTGTTCTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGAGTTCGAGACTTGATCTCTTGGGTGTTTCAAATAAGGGAAGACAGAAAAGTAAGTGAGGTGTTCGATCCATTAATATACAATAAGCAGCATGAGACAGCGATGTCTGAAGTTCTTGATATAGCATGCCTTTGCTTATGCAAGGTACCTAAAGAGAGGCCTTCAACTCAACAGCTGGTTTGTTGGCTTGATAGAGTAGGTTAA 3012 42.03 MGLHSFFLILLPVSFFFQFRLSLSQNPTICHSDDFKALQDFHSAFDSQIDGWHTGCSTNCCSCIGLTCDSSGRVVKMELGGRKIKGQLPYSIARLEHLRVLNLSSNSLNGSIPLALFHLPYLEVLDLSFNDLVGSISSGTINLPSIRLLNVSHNNFNGSLPLGVCVNSSRIEILNLGFNRFTGMFPVELAECVSLKRLFVESNLLSGGIPDEASGLRKLTHFCVQNNKLSGSLNGVVGNLTNLVRLDLSSNGFFGEIPDVFYNSVNLSYFATESNRFSGKIPNSLSNSASLTVLNLRNNSIQGTLDLNCSAMKSLVTLDLGTNRFHGSIPSNLPSCTQLRSINLARNNLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNILQHCKNLSTMVLTFNFRGEVLEDDPNLHFKSLQVFIIANCGLKGIIPQWLRGSRKLQLLDLSWNRLGGTIPPWFSELQSLFYLDLSNNSFTGYIPKEMTIMRSFIDRKFSPDEPSSLDFSLFVTRNGTGLQYNQVWRFPPTLNLSLNNLSGPISPEFGNLKEILVLDLKINSLSGSIPSSLSGMVSLETLDLSHNNLSGIIPPSLQNLNFLSKFSVAYNHLHGAIPEGGQFHSFDNSSFEGNNFCVRDRICTSIDPLVPSHKSRMDIGSIVGIVIGIVFGIMFLITLMVVFMLRAPRGRVGDPENEVSNTDDKDLEEGRSGLVVLFQNNNNGSLSLEDILKWTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFRAEIETLSGAQHQNLVLLLGYCLYKNDRLLIYSFMENGSLDYWLHEKLDGPSCLNWDTRLQIARGAAAGLAYLHQSCEPHILHRDIKSSNILLDKNFKAHLADFGLARLILPYDSHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGVRDLISWVFQIREDRKVSEVFDPLIYNKQHETAMSEVLDIACLCLCKVPKERPSTQQLVCWLDRVG 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9434 12445 + Cp4.1LG01g06580.1 Cpe01g00002 461315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00002 1003 Pfam Protein kinase domain 729 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00002 1003 Pfam Leucine Rich Repeat 568 590 IPR001611 GO:0005515
Cpe01g00002 1003 Pfam Leucine Rich Repeat 437 459 IPR001611 GO:0005515
Cpe01g00002 1003 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515
Cpe01g00002 1003 ProSiteProfiles Protein kinase domain profile. 728 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00002 1003 Gene3D Transferase(Phosphotransferase) domain 1 804 1002 - -
Cpe01g00002 1003 PRINTS Leucine-rich repeat signature 438 451 - -
Cpe01g00002 1003 PRINTS Leucine-rich repeat signature 566 579 - -
Cpe01g00002 1003 PANTHER TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 14 267 - -
Cpe01g00002 1003 PANTHER TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 172 1002 - -
Cpe01g00002 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 172 1002 - -
Cpe01g00002 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 14 267 - -
Cpe01g00002 1003 ProSitePatterns Protein kinases ATP-binding region signature. 734 756 IPR017441 GO:0005524
Cpe01g00002 1003 Gene3D Ribonuclease Inhibitor 31 308 IPR032675 -
Cpe01g00002 1003 SUPERFAMILY L domain-like 206 608 - -
Cpe01g00002 1003 Gene3D Phosphorylase Kinase; domain 1 689 803 - -
Cpe01g00002 1003 ProSiteProfiles Leucine-rich repeat profile. 568 591 IPR001611 GO:0005515
Cpe01g00002 1003 SUPERFAMILY Protein kinase-like (PK-like) 711 999 IPR011009 -
Cpe01g00002 1003 Pfam Leucine rich repeat 91 132 IPR001611 GO:0005515
Cpe01g00002 1003 SMART LRR_typ_2 143 167 IPR003591 -
Cpe01g00002 1003 SMART LRR_typ_2 459 483 IPR003591 -
Cpe01g00002 1003 SMART LRR_typ_2 216 239 IPR003591 -
Cpe01g00002 1003 SMART LRR_typ_2 95 119 IPR003591 -
Cpe01g00002 1003 SMART LRR_typ_2 566 589 IPR003591 -
Cpe01g00002 1003 SMART LRR_typ_2 312 336 IPR003591 -
Cpe01g00002 1003 SMART LRR_typ_2 240 263 IPR003591 -
Cpe01g00002 1003 SUPERFAMILY L domain-like 30 268 - -
Cpe01g00002 1003 Gene3D Ribonuclease Inhibitor 309 634 IPR032675 -
Cpe01g00002 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Cpe01g00002 1003 SMART serkin_6 728 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00002 Cpe-Chr1:9434 Cpe01g00889 Cpe-Chr1:5243696 0 dispersed
Cpe01g00002 Cpe-Chr1:9434 Cpe01g01866 Cpe-Chr1:15984614 9.12E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62098 PF00069 Pkinase 1.00E-44 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00002 - - bhj:120069286 1622.83